Locus 814

Sequence ID 3R_DroMel_CAF1
Location 2,776,827 – 2,776,919
Length 92
Max. P 0.596727
window1297

overview

Window 7

Location 2,776,827 – 2,776,919
Length 92
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 81.85
Mean single sequence MFE -18.02
Consensus MFE -11.10
Energy contribution -11.16
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -1.90
Structure conservation index 0.62
SVM decision value 0.13
SVM RNA-class probability 0.596727
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2776827 92 + 27905053
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAAGAUGCUCA-------------CACAGCAUCCAAAA-AAAGCUU-
.......((...........((((((....((....))....))))))...............((((((..-------------...)))))).....-...))..- ( -18.10)
>DroVir_CAF1 100259 85 + 1
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCUGUGUGCAC---------------ACAGCAUCUCA------GCAU-
.......((...........((((((....((....))....))))))............(((((....)---------------)))).......------))..- ( -17.30)
>DroGri_CAF1 96898 85 + 1
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAAUGCGUGCACAUUCCACAUUCUGUGUGCUC---------------ACAGCACCUCA------GCCC-
....................((((((....((....))....))))))............(((.((((..---------------...))))..))------)...- ( -16.60)
>DroWil_CAF1 68797 105 + 1
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAG--UGCUCAGUGCCCAAACACACACAGCAUCAACAAGAAGGCCAA
.......((...(((((...((((((....((....))....))))))..............(--((((..(((........)))..)))))....))))).))... ( -18.30)
>DroMoj_CAF1 103190 85 + 1
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCUGUGUGCUC---------------ACAGCAUCGCC------GCAU-
..((((.((...........((((((....((....))....))))))............(((((....)---------------))))....)).------))))- ( -19.40)
>DroAna_CAF1 49623 93 + 1
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCGCAUUCAAGAUGCUCA-------------CACAGCAUCCCAAAAAGAGCUA-
.......((...(((((...((((((....((....))....))))))...............((((((..-------------...))))))..)))))..))..- ( -18.40)
>consensus
CAAUGUCGCAAAUUUUUAUCGCACGUCUACAAGAAAUUCAACGCGUGCACAUUCCACAUUCAGUGUGCUC_______________ACAGCAUCCCA______GCAU_
.......((...........((((((................))))))................(((((..................)))))..........))... (-11.10 = -11.16 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:49 2006