Locus 8138

Sequence ID 3R_DroMel_CAF1
Location 21,856,293 – 21,856,397
Length 104
Max. P 0.569012
window13089

overview

Window 9

Location 21,856,293 – 21,856,397
Length 104
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.90
Mean single sequence MFE -34.20
Consensus MFE -28.41
Energy contribution -27.88
Covariance contribution -0.53
Combinations/Pair 1.10
Mean z-score -1.64
Structure conservation index 0.83
SVM decision value 0.07
SVM RNA-class probability 0.569012
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21856293 104 + 27905053
----------CGUUUGU------UUUGCUCGAUUUUCAUAUCGUGAGAACCGCUCGAGACGCGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGACGCUUAUAUGGUUACG
----------.....((------((((..((.(((((((...))))))).))..))))))((((((((((.....))))))))))........(((((.((((...)))).))))).... ( -31.30)
>DroVir_CAF1 43732 113 + 1
---GCU----CGUAUGUGCGUCGAUUGCUCGAUUUUCAUAUCGUGAGAACCGCUCGAGAAACGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGUCGCUUAUAUGGUUGCG
---((.----....(((((........((((((((((((...)))))))....)))))..((((((((((.....)))))))))))))))...(((((.((((...)))).))))).)). ( -37.20)
>DroGri_CAF1 37753 113 + 1
---GUU----CGUUUGUUCGUCACUUGCUCGAUUUUCAUAUCGUGAGAACUGCUCGAGUAACGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGUCGCUUAUAUGGUUACG
---...----.((.(((........((((((((((((((...)))))))....)))))))((((((((((.....))))))))))))).))..(((((.((((...)))).))))).... ( -32.40)
>DroWil_CAF1 44261 98 + 1
----------------U------GCUGCUCGAUUUUCAUAUCGUGAGAACCGCUUGAGACGCGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGACGCUUAUAUGGUUACG
----------------(------((..((((((((((((...)))))))....)))))..((((((((((.....))))))))))))).....(((((.((((...)))).))))).... ( -28.60)
>DroMoj_CAF1 42978 113 + 1
---GUU----CACUUGUGCGUCGCUUGCUCGAUUUUCAUAUCGUGAGAGCCGCUCGAGUAACGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGUCGCUUAUAUGGUUACG
---...----.(((((.(((..(((..(.((((......)))).)..)))))).))))).((((((((((.....))))))))))........(((((.((((...)))).))))).... ( -38.00)
>DroPer_CAF1 41325 114 + 1
CUCGAUCUUGGGUUUGU------UUUGCUCGAUUUUCAUAUCGUGAGAACCGCUCGAGACGCGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGACGCUUAUAUGGUUACG
.....((((((((..((------(((.(.((((......)))).)))))).))))))))(((((((((((.....))))))))))).......(((((.((((...)))).))))).... ( -37.70)
>consensus
___G_U____CGUUUGU______CUUGCUCGAUUUUCAUAUCGUGAGAACCGCUCGAGAAACGUCGUGUGUUUCCCACGCGAUGUGCACACCUGCCAUUUAAGACGCUUAUAUGGUUACG
...........................((((((((((((...)))))))....)))))..((((((((((.....))))))))))........(((((.((((...)))).))))).... (-28.41 = -27.88 +  -0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:26 2006