Locus 8137

Sequence ID 3R_DroMel_CAF1
Location 21,855,576 – 21,855,673
Length 97
Max. P 0.871732
window13088

overview

Window 8

Location 21,855,576 – 21,855,673
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 95.35
Mean single sequence MFE -23.50
Consensus MFE -18.23
Energy contribution -21.03
Covariance contribution 2.80
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.78
SVM decision value 0.87
SVM RNA-class probability 0.871732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21855576 97 - 27905053
AACACACAAAGGGAGCCAAGAAAAGCAGCCUGAAAACUCAGUCUUUGCACAACGAUUUCCUUGGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
.......(((((((((((((....((((.((((....))))...)))).....(....)))))))))))))).........((........)).... ( -23.20)
>DroSec_CAF1 39177 97 - 1
AACACACAAAGGGAGCCAAGGAAAGCAGCCUGAAAACUCAGUCUUUGCACAACGAUUUCCUUGGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
.......(((((((((((((((((((((.((((....))))...)))).......))))))))))))))))).........((........)).... ( -29.31)
>DroSim_CAF1 32285 97 - 1
AACACACAAAGGGAGCCAAGGAAAGCAGCCUGAAAACUCAGUCUUGGCACAACGAUUUCCUUGGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
.......(((((((((((((((((...(((.((........))..))).......))))))))))))))))).........((........)).... ( -28.70)
>DroEre_CAF1 32806 94 - 1
AACACACAAUGGGAGCCAAGCAAAGCAGCCUGAAAACUCAUUCUUUGCACAACGAUCUC---GGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
..........(((((((..((((((.....(((....)))..)))))).....(....)---)))))))............((........)).... ( -17.20)
>DroYak_CAF1 36617 94 - 1
AACACACAAUGGGAGCCAAGGAAAGCAGCCUGAAAACUCAUUCUUUGCACAACGAUUUC---GGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
.........(((((...(((((((((((...(((......))).))))....((....)---).)))))))))))).....((........)).... ( -19.10)
>consensus
AACACACAAAGGGAGCCAAGGAAAGCAGCCUGAAAACUCAGUCUUUGCACAACGAUUUCCUUGGUUUCCUUUCCCACGCACGCACAGCAUAGCAAUA
.......(((((((((((((((((((((.((((....))))...)))).......))))))))))))))))).........((........)).... (-18.23 = -21.03 +   2.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:25 2006