Locus 8135

Sequence ID 3R_DroMel_CAF1
Location 21,850,728 – 21,850,819
Length 91
Max. P 0.999550
window13084

overview

Window 4

Location 21,850,728 – 21,850,819
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 95.47
Mean single sequence MFE -24.23
Consensus MFE -23.29
Energy contribution -23.48
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.96
SVM decision value 3.71
SVM RNA-class probability 0.999550
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21850728 91 - 27905053
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAACGGAUUUCCCCCGCCCCC-CGGCUCCAUCAUUGUCC
...(((...............(((((((((.((....))))))))))).((((....((....))...(((...-.))))))))))...... ( -21.40)
>DroSec_CAF1 34351 91 - 1
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCUCC-UGGCUCCAUCAUCUUCC
...(((...............(((((((((.((....))))))))))).((((...(((......)))(((...-.))))))))))...... ( -26.20)
>DroSim_CAF1 27676 91 - 1
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCCCC-UGGCUCCAUCAUCUUCC
...(((...............(((((((((.((....))))))))))).((((...(((......)))(((...-.))))))))))...... ( -25.00)
>DroEre_CAF1 27834 91 - 1
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCCCC-CGGCUCCAUCAUCGUCC
..................((((((((((((.((....)))))))))))(((((...(((......)))(((...-.))))))))...))).. ( -25.50)
>DroYak_CAF1 31449 92 - 1
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCCCCUCGGCUCCAUCAUCGUCC
..................((((((((((((.((....)))))))))))(((((...(((......)))(((.....))))))))...))).. ( -25.50)
>DroAna_CAF1 32901 91 - 1
AAUUGAAAAUUUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCCCC-UCGCUCCAUCGCCGCCC
.....................(((((((((.((....)))))))))))(((((...(((......)))((....-..)))))))........ ( -21.80)
>consensus
AAUUGAAAAUAUUCUCCCACGUUCUCGAGCUGCACACGUGUUCGAGAAAUGGAAAAGGGAUUUCCCCCGCCCCC_CGGCUCCAUCAUCGUCC
...(((...............(((((((((.((....))))))))))).((((...(((......)))(((.....))))))))))...... (-23.29 = -23.48 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:21 2006