Locus 8134

Sequence ID 3R_DroMel_CAF1
Location 21,849,583 – 21,849,673
Length 90
Max. P 0.983246
window13083

overview

Window 3

Location 21,849,583 – 21,849,673
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 74.45
Mean single sequence MFE -12.43
Consensus MFE -9.10
Energy contribution -8.87
Covariance contribution -0.22
Combinations/Pair 1.18
Mean z-score -1.94
Structure conservation index 0.73
SVM decision value 1.94
SVM RNA-class probability 0.983246
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21849583 90 - 27905053
GUUAAUUUUUGA-AACCAUUCC-A-CAAAAAUUAACACGCAAGCCGA--UCAACUCAACUGAAGAGCUUUACAAA-AAUUGUGAUACAUUUUACUU
(((((((((((.-.........-.-))))))))))).(((((.....--....(((.......))).........-..)))))............. ( -13.05)
>DroVir_CAF1 34795 89 - 1
GUUAAUUUUUUGAAAAAAAUGC-AAACAAAAUUAACU-GCAAGUCGCUUAACACUCAACUG---AGCUUUACAA--AAUUGUGAUAAAUUUUAACU
(((((...((((.......(((-(............)-)))....(((((.........))---))).(((((.--...)))))))))..))))). (  -9.60)
>DroPse_CAF1 32430 82 - 1
GUUAAUUUUUGU-AA-CAAUCC-A-CAAAAAUUAACACGCAAGCC---------UCAACUGAA-AGCUUUACAAAAAAUUGUGAUACAUUUUAUUU
((((((((((((-..-......-)-))))))))))).(....)..---------.....((((-(...((((((....))))))....)))))... ( -15.40)
>DroMoj_CAF1 32878 88 - 1
GCUAAUUUUGAGCAUCCACAACAAAUCAAAAUUAACA-GCAAGUCGC--AACACUCAAUCG---AGCUUUACAA--AAUUGUGAUACAUUUUAACU
(((((((((((..............))))))))...)-))..(((((--((..(((....)---))........--..)))))))........... ( -11.64)
>DroAna_CAF1 31733 85 - 1
GUUAAUUUUUGA-CCACACUUU-A-CAAAAAUUAACAAGCAAGCCGA--CAACCUC-----CAGAGCUUUACUAA-AAUUGUGAUAAAUUUUACUU
(((((((((((.-.........-.-)))))))))))....(((((..--.......-----..).))))...(((-((((......)))))))... ( -11.80)
>DroPer_CAF1 32744 82 - 1
GUUAAUUUUUGA-AA-CAAUCC-A-CAAAAAUUAACACGCAAGCC---------UCAACUGAA-AGCUUUACAAAAAAUUGUGAUACAUUUUAUUU
(((((((((((.-..-......-.-))))))))))).(....)..---------.....((((-(...((((((....))))))....)))))... ( -13.10)
>consensus
GUUAAUUUUUGA_AA_CAAUCC_A_CAAAAAUUAACACGCAAGCCG____A_ACUCAACUGAA_AGCUUUACAAA_AAUUGUGAUACAUUUUAAUU
(((((((((((..............)))))))))))................................((((((....))))))............ ( -9.10 =  -8.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:20 2006