| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,847,705 – 21,847,795 |
| Length | 90 |
| Max. P | 0.943849 |
| Location | 21,847,705 – 21,847,795 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.10 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -17.40 |
| Energy contribution | -17.57 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.943849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21847705 90 + 27905053 -----CCU--UAAA-----AUACACAACAUAAAACA-ACCCAAUC-------GAUCAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCGCUG -----...--....-----.................-........-------.......(((.((((....)))).)))((.(((.((((....)))).))).))..... ( -18.40) >DroVir_CAF1 32105 92 + 1 -----ACU-UUAACAGA-AAUAGUGA---A-GGUGA-UUCGAAUC------ACAACAUGGUCAUGGAGAUGUCCAAGACCUAUCAGUACCGGAAGGUGAUGAAGCCGCUG -----...-........-..(((((.---.-.((((-(....)))------)).....((((.((((....)))).))))..(((.((((....)))).)))...))))) ( -27.30) >DroGri_CAF1 27081 92 + 1 -----ACU-AUAACAGA-AAUUGUGU---G-CGUGC-CUCGAAUC------ACAACAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCGCUG -----...-....(((.-..(((((.---.-((...-..))...)------))))....(((.((((....)))).)))((.(((.((((....)))).))).))..))) ( -24.80) >DroYak_CAF1 28411 87 + 1 -----CCU--UUAA-----ACACAUA---AAUAACU-ACCCAAUC-------GAUCAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCGCUG -----...--....-----.......---.......-........-------.......(((.((((....)))).)))((.(((.((((....)))).))).))..... ( -18.40) >DroMoj_CAF1 30088 99 + 1 AUAAAACU-AUAACAGAGAAUAGUGA---AACGUGA-CUCGAAUC------ACAACAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCGCUG ........-...........(((((.---...((((-......))------))......(((.((((....)))).)))((.(((.((((....)))).))).))))))) ( -25.00) >DroPer_CAF1 30584 101 + 1 -----UCUAUGAAAAUA-AAUAUCCA---AAGAUCAAAUCCGAUCAAAGACACAACAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCCCUU -----..(((....)))-....((((---..((((......))))...(((........))).)))).(((((...))))).(((.((((....)))).)))........ ( -22.50) >consensus _____ACU__UAAAAGA_AAUAGUGA___AACAUCA_AUCCAAUC______ACAACAUGGUCAUGGAGAUGUCCAAGACGUAUCAGUACCGCAAGGUGAUGAAGCCGCUG ...........................................................(((.((((....)))).)))((.(((.((((....)))).))).))..... (-17.40 = -17.57 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:19 2006