| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,846,225 – 21,846,317 |
| Length | 92 |
| Max. P | 0.954552 |
| Location | 21,846,225 – 21,846,317 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.50 |
| Mean single sequence MFE | -19.86 |
| Consensus MFE | -16.59 |
| Energy contribution | -17.01 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21846225 92 + 27905053 --------------------------ACUUUAAACUCCCAAAAAGACCGCACAUUUUGUCCACGUGCAGUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU --------------------------.......((((.(((((.(......).))))).....((((((((((((((((................)).)))))))..))))))))))) ( -21.49) >DroSec_CAF1 29730 92 + 1 --------------------------ACUUUAAACUCCCAAAUAUACCCAAUAUUUUGUCCACAUGCAUUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU --------------------------.......((((.(((((((.....)))))).........(((..(((((((((................)).)))))))....)))).)))) ( -16.29) >DroSim_CAF1 22555 92 + 1 --------------------------ACUUUAAACUCCCAAAUAUACCCAAUAUUUUGUCCACGUGCAUUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU --------------------------.......((((..((((((.....)))))).......(((((..(((((((((................)).)))))))....))))))))) ( -20.09) >DroEre_CAF1 23133 92 + 1 --------------------------ACUGAAAACCCCCAAAAAGCACCACAUUUUUUUCUGUCUGCAGUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU --------------------------..................((...(((........)))..((((((((((((((................)).)))))))..))))))).... ( -15.59) >DroYak_CAF1 26739 78 + 1 --------------------------A---AAUAGACCCAAAA-----------UUUUUCCAUGUGCAGUUGUCGCAGUCAUCAUCAUCAACCAAGCAUGCGACAUAAUUGCGCGAGU --------------------------.---.............-----------........(((((((((((((((((................)).)))))))..))))))))... ( -18.19) >DroAna_CAF1 27259 118 + 1 GACAAUAUUCCCAUGCUGAAAAUGUAACUUUAAUAGGCCUCGGCUAGGAACUAUUUUUUCACUGUGCAGUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU ((.((((((((...(((((...(((.......)))....)))))..)))).))))...))(((((((((((((((((((................)).)))))))..))))))).))) ( -27.49) >consensus __________________________ACUUUAAACUCCCAAAAAUACCCAAUAUUUUGUCCACGUGCAGUUGUCGCAGUCAUCAUCAUCAGCCAAGCAUGCGACAUAAUUGCGCGAGU ..............................................................(((((((((((((((((................)).)))))))..))))))))... (-16.59 = -17.01 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:13 2006