| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,843,143 – 21,843,243 |
| Length | 100 |
| Max. P | 0.591815 |
| Location | 21,843,143 – 21,843,243 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.72 |
| Mean single sequence MFE | -39.58 |
| Consensus MFE | -26.85 |
| Energy contribution | -27.35 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591815 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21843143 100 - 27905053 ---------------GCGCAGCAACUUCGCCUCAUAUAUAAAUAUGAGCGACGCC-GGCGCAGCAGCAUCAGUAAACGACCAGCUCUUGCGAGGUGCGCACACGCAACG-CUCGCUG--- ---------------(((.(((....((((.((((((....)))))))))).((.-.(((((.(.(((..(((.........)))..)))..).)))))....))...)-)))))..--- ( -35.40) >DroVir_CAF1 26360 101 - 1 ---------------GCGCUGCGGCAGCGCCUCAUAUAUAAAUAUGAGCGCCGGAUGGCGCAGCAGCAUCAGAAAACGAACGACUCUCGCGAGGUGCGCACACGCAACG-CUCGCUG--- ---------------((((((((.((((((.((((((....))))))))))....)).)))))).)).....................((((((((((....))).)).-)))))..--- ( -40.70) >DroGri_CAF1 21462 104 - 1 ---------------GCGCUGCGGCAGCGCCUCAUAUAUAAAUAUGAGCGCCGGAUGGCGCAGCAGCAUCAGAAAACGAACGACUCUCGAGAGGUGCGCACACGCAACG-CUCGCUCGCU ---------------((((((((.((((((.((((((....))))))))))....)).))))))(((.........(((.......))).((((((((....))).)).-)))))).)). ( -39.40) >DroWil_CAF1 26788 116 - 1 GAGCAGAGCAGCGCUGCGCAGCAACAGCGGGUCAUAUAUAAAUAUGAGCGGCAAUUGGCGCAGCAGCAUCAGUAAACGAUCAACACUGGCGAGGUGCGCACACGCAACG-CUCGCUG--- .(((.((((.(((((((((..(((..((.(.((((((....)))))).).))..)))))))))).....((((...........))))))..(.((((....)))).))-)))))).--- ( -44.00) >DroMoj_CAF1 24376 102 - 1 ---------------GCGCUGCGGCUGCGCCUCAUAUAUAAAUAUGAGCGCCGGCUGGCGCAGCAGCAUCAGAAAACGAACGACUCUCGCGAGGUGCGCACACGCAACGACUCGCUG--- ---------------((((((((((((.(((((((((....))))))).))))))...)))))).)).....................(((((.((((....))))....)))))..--- ( -41.60) >DroAna_CAF1 23719 100 - 1 ---------------GCGCAGCGACAGCGGCUCAUAUAUAAAUAUGAGCGACGCC-GGCGCAGCAGCAUCAGUAAACGACCAGCACUCGCGAGGUGCGCACACGCAACA-CUCGCUG--- ---------------((((.(((.(.(((((((((((....))))))))..))).-).))).)).)).....................(((((.((((....))))...-)))))..--- ( -36.40) >consensus _______________GCGCAGCGACAGCGCCUCAUAUAUAAAUAUGAGCGCCGGCUGGCGCAGCAGCAUCAGAAAACGAACAACUCUCGCGAGGUGCGCACACGCAACG_CUCGCUG___ ...............((((.......(((.(((((((....))))))))))......))))...........................(((((.((((....))))....)))))..... (-26.85 = -27.35 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:12 2006