Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,775,742 – 2,775,839 |
Length | 97 |
Max. P | 0.527741 |
Location | 2,775,742 – 2,775,839 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -14.17 |
Energy contribution | -13.86 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.31 |
Mean z-score | -1.41 |
Structure conservation index | 0.67 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2775742 97 - 27905053 GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGGGGGCAUAGAAGGGGG ..(((((..(((..(((.(-(((((.((((....)))).)).))))..........(((((......)))))..)))...)))..)))))........ ( -22.30) >DroVir_CAF1 98818 90 - 1 CGUGUGCGAUUGACCGAAGGCGCAUAUAAUAAAAAUUAAAUCGCACAAAAUAAAAAUGUUUAAGAGGC--------GAGUCAGAGGCACAAAACCGAC ..(((((..(((((((...(((.((.((((....)))).)))))...(((((....)))))......)--------).)))))..)))))........ ( -17.50) >DroGri_CAF1 95227 90 - 1 CGUGUGCGAUUGACCAAAGGCGCAUAUAAUAAAAAUUAAAUCGCACAAAAUAAAAAUGUUCAAGUGGC--------GAGUCGGAGGCACGAAACCGAC .(((((((.((......)).))))))).............((((.((.((((....))))....))))--------))(((((..........))))) ( -17.60) >DroSec_CAF1 51344 97 - 1 GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGUGGGCACAGAGGGGGG ..(((((......((((.(-(((((.((((....)))).)).))))..........(((((......))))).........)))))))))........ ( -24.10) >DroSim_CAF1 54199 97 - 1 GGUGUGCGAUUGACCACAG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGUGGGCACAGAGGGGGG ..(((((......((((.(-(((((.((((....)))).)).))))..........(((((......))))).........)))))))))........ ( -24.10) >DroEre_CAF1 52905 97 - 1 GGUGUGCGAUUGACCAAGG-CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGAGGUGGGAAGCGGGGGCACAGAGGGGGA ..(((((..(((.(((..(-(((((.((((....)))).)).))))..........(.(((......))).).)))....)))..)))))........ ( -21.10) >consensus GGUGUGCGAUUGACCAAAG_CGCAUAUAAUAAAAAUUAAAUCGCGCAAUAUAAAAACGCUCAAGUUGGAGUGGAGUGAAACGGGGGCACAGAAGGGGG ..(((((((((...........................)))))))))..........((((..(((............)))..))))........... (-14.17 = -13.86 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:48 2006