Locus 8129

Sequence ID 3R_DroMel_CAF1
Location 21,838,481 – 21,838,573
Length 92
Max. P 0.687879
window13073

overview

Window 3

Location 21,838,481 – 21,838,573
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -17.65
Consensus MFE -13.67
Energy contribution -13.45
Covariance contribution -0.22
Combinations/Pair 1.21
Mean z-score -0.96
Structure conservation index 0.77
SVM decision value 0.32
SVM RNA-class probability 0.687879
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21838481 92 - 27905053
AUUUUAUCCAACUCCUUCGCUUGCUCCU-CCUGUGCUGUCGACAUCAAUUUGCAUUUUUAGUGUAGGAGAAAUGCGUUUGAGAUUGAUAGAGA-
.(((((((...(((...(((......((-((((..(((....((......))......)))..))))))....)))...)))...))))))).- ( -23.90)
>DroVir_CAF1 20928 75 - 1
----UUUUCUACU--------U-------CUUUUUUUUUUGACAUCAAUUUGCAUUUUUAGUGUAGGAGAAAUGCGUUAGUGAUUGAUAGAGCG
----.........--------.-------..............((((((((((((((((........))))))))).....)))))))...... ( -11.10)
>DroPse_CAF1 20577 79 - 1
--UUCUUUC------------UACUCCUUCUCAUGCUGUCGACAUCAAUUUGCAUUUUUAGUGUAGGAGAAAUGCGUUUGUGAUUGAUAGAAA-
--.......------------..............(((((((((.(((..(((((((((........))))))))).))))).)))))))...- ( -16.80)
>DroEre_CAF1 15367 92 - 1
CUUUUAUCCAACUCCUUCGUUUGCUCCU-CCCCUGCUGUCGACAUCAAUUUGCAUUUUUAGUGUAGGAAAAAUGCGUUUGAGAUUGAUAGAGA-
............................-...((.(((((((..((((..(((((((((........))))))))).))))..))))))))).- ( -19.70)
>DroYak_CAF1 15595 92 - 1
AUUUUACCCAACUCCUUCGUUUGCUCCU-CCCCGGCUGUCGACAUCAAUUUGUAUUUUUAGUGUAGGAGAAAUGCGUUUGAGAUUGAUAGAGA-
.(((((..((((((...(((...(((((-.(...((((...(((......))).....))))).)))))....)))...))).))).))))).- ( -17.60)
>DroPer_CAF1 20617 79 - 1
--UUCUUUC------------UACUCCUUCUCAUGCUGUCGACAUCAAUUUGCAUUUUUAGUGUAGGAGAAAUGCGUUUGUGAUUGAUAGAAA-
--.......------------..............(((((((((.(((..(((((((((........))))))))).))))).)))))))...- ( -16.80)
>consensus
__UUUAUCCAACU________UGCUCCU_CCCAUGCUGUCGACAUCAAUUUGCAUUUUUAGUGUAGGAGAAAUGCGUUUGAGAUUGAUAGAGA_
...................................(((((((...(((..(((((((((........))))))))).)))...))))))).... (-13.67 = -13.45 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:11 2006