| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,835,629 – 21,835,734 |
| Length | 105 |
| Max. P | 0.540844 |
| Location | 21,835,629 – 21,835,734 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 90.41 |
| Mean single sequence MFE | -29.93 |
| Consensus MFE | -24.54 |
| Energy contribution | -26.32 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21835629 105 - 27905053 UUAUAGAUAUUUUAAUUAAUUCCCUUUCUUGCGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACC ....................((((((((((.((((.(....).))))......((((((((((..((((....))))..)))))))))).))))))))))..... ( -32.60) >DroSec_CAF1 12222 105 - 1 UUAUAGAUAUUUUAAUUAAUUCCCUUUCUUGCGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACC ....................((((((((((.((((.(....).))))......((((((((((..((((....))))..)))))))))).))))))))))..... ( -32.60) >DroSim_CAF1 12552 105 - 1 UUAUAGAUAUUUUAAUUAAUUCCCUUUCUUGCGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACC ....................((((((((((.((((.(....).))))......((((((((((..((((....))))..)))))))))).))))))))))..... ( -32.60) >DroEre_CAF1 12388 105 - 1 UUAUAGAUAUUUUAAUUAAUUCCCUUUCUUGCGGCCCAAGUGUGCUGGACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGUGGGAUUACC ................(((((((((..((((((..(((.(....)))).)))..(((((((((..((((....))))..))))))))))))..)).))))))).. ( -32.20) >DroYak_CAF1 12593 105 - 1 UUAUAGAUAUUUUAAUUAAUUCCCUUUCAUGCGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUACUUCAAUAUCGCUUCAAGGGAGUGGGAUUACC ............(((((.((((((((.((((((((.(....).))))..)))).(((((((((..((((....))))..)))))))))))))))))..))))).. ( -36.90) >DroAna_CAF1 15982 90 - 1 GUAUAGAUAUUUUAAUUAAUUUCUUUUCUUACGGCCCAAGUGUGCUGAAAGUGUGGAGCGAUAGGGAGGUUUU--------UUAUUUCG-------GGGAUUACU ................((((..((...((((..(((((....(.....)....))).))..))))(((((...--------..))))))-------)..)))).. ( -12.70) >consensus UUAUAGAUAUUUUAAUUAAUUCCCUUUCUUGCGGCCCAAGUGUGCUGAACGUGUGGAGCGAUAGGGAGGGUUUCUUCAAUAUUGUUUCAAGGGAGAGGGAUUACC ................((((((((((((((.((((.(....).)))).......(((((((((..((((....))))..)))))))))))))))).))))))).. (-24.54 = -26.32 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:10 2006