| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,826,116 – 21,826,218 |
| Length | 102 |
| Max. P | 0.632903 |
| Location | 21,826,116 – 21,826,218 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 78.49 |
| Mean single sequence MFE | -48.77 |
| Consensus MFE | -30.45 |
| Energy contribution | -32.57 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21826116 102 - 27905053 ----GUGGUCAACAGGGAAUGGCUGGUCGAAC---------UGG---UAUUGGAGUUGGGACUGCCGGCGUAGCUGGAGAUUGGCGAAAUGGGCACGGAGUAGGCAUCCCGAUUGGCG ----...(((((..((((...((..(((...(---------..(---(......(((((.....)))))...))..).)))..)).......((.(......))).))))..))))). ( -31.80) >DroVir_CAF1 7362 115 - 1 GCAAGUGGUCAGGAGCGAGGCGCUGCCCAGUUGUUCGC---UGGCCACACUUGAGUUGGGGCUGCCGGCAUAGCUGGAGAUGGGCGAAAUGGGCACAGAGUAGGCAUCCCGGCUGGCA ((..(((((((((((((((((...)))...)))))).)---))))))).....((((((((.((((.((...(((.......)))....((....))..)).)))))))))))).)). ( -46.50) >DroPse_CAF1 6974 118 - 1 GCAGGUGGUGAGUAGGGAGGCACUGCCCAGACGCUCGCUGCUGGCGAGACUGGAGUUGGGGCUGCCGGCAAAGCUGGAGACGGGCGAGAUGGGCACGGAGUAGGCGUCCCGGCUGGCG .......((.(((.((((.((.(((((((....((((((((((((.((.((......))..)))))))))...(((....)))))))).)))))).)......)).)))).))).)). ( -54.90) >DroMoj_CAF1 3794 115 - 1 GCAGGUGGUCAGCAGGGAGGCGCUGCCCGUUCGCUCGC---UGGCCACGCUGGAGUUGGGGCUGCCGGCAUAGCUGGAGAUGGGCGAAAUGGGCACCGAGUAGGCAUCCCGGCUGGCA .......((((((.((((.((..(((((((((((((.(---..((...((((((((....))).)))))...))..)....))))).)))))))).(.....))).)))).)))))). ( -55.20) >DroAna_CAF1 6421 102 - 1 ----GUGGUCAGCAGGGAGGUGCUGGCCGAGC---------UGG---CGUUGGAGUUGGGACUGCCGGCGAAGCUCGAGACUGGCGAAAUGGGAACGGAGUAGGCGUCCCGGCUGGCG ----...((((((.((((.((((..(((((((---------(..---(((((((((....))).)))))).)))))).).)..))....((....))......)).)))).)))))). ( -49.20) >DroPer_CAF1 6669 118 - 1 GCAGGUGGUGAGUAGGGAGGCACUGCCCAGACGCUCGCUGCUGGCGAGACUGGAGUUGGGGCUGCCGGCAAAGCUGGAGACGGGCGAGAUGGGCACGGAGUAGGCGUCCCGGCUGGCU ......(((.(((.((((.((.(((((((....((((((((((((.((.((......))..)))))))))...(((....)))))))).)))))).)......)).)))).))).))) ( -55.00) >consensus GCAGGUGGUCAGCAGGGAGGCGCUGCCCAGACGCUCGC___UGGC_ACACUGGAGUUGGGGCUGCCGGCAAAGCUGGAGACGGGCGAAAUGGGCACGGAGUAGGCAUCCCGGCUGGCG .......((((((.((((.((((((((((..((((((....((((....(((((((....))).))))....))))....))))))...)))))....)))..)).)))).)))))). (-30.45 = -32.57 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:04 2006