Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,823,073 – 21,823,201 |
Length | 128 |
Max. P | 0.983618 |
Location | 21,823,073 – 21,823,187 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 87.07 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -31.02 |
Energy contribution | -31.42 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.90 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21823073 114 - 27905053 GCAAGAUUCCCUCGGCGUUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGCACUGAAAACA--AUCCAUAUGUGGCAGAGAACAAUUU ((((((...(((((((((((((....))))))..................(((....))))))))))......)))))).(((...(((--.......)))..))).......... ( -41.10) >DroSec_CAF1 93544 98 - 1 GCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGCACUGAAAACA--AUCUAUAUG---------------- ((((((...((((((((.((((....)))).)..................(((....))))))))))......))))))..........--.........---------------- ( -33.20) >DroSim_CAF1 96049 105 - 1 GCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGCACUGAAAACA--AUCUAUAUGUUGCAGA--------- ((((((...((((((((.((((....)))).)..................(((....))))))))))......)))))).(((..((((--.......)))).))).--------- ( -36.10) >DroEre_CAF1 99841 115 - 1 GCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGCCUCUCUUCUUGCACUGAAAACAAAAUCUAUACGCUGUAGCAAACAAG-C ((((((....(((((((.((((....)))).)..................(((....))))))))).......))))))....................((....)).......-. ( -31.20) >DroYak_CAF1 90932 113 - 1 GCAAGAUUCCCUCGGCGCUGCACGUGUGCAACUUCAAA-AAAUUGGAUCGGGCGGAAGCCGCUGAGACUCUCUUCUUGCACUGAAAACA--AUCUCUAUGCUAUAGAAAACAGGGC ((((((....((((((..((((....))))..(((((.-...)))))...(((....))))))))).......))))))..........--...(((((...)))))......... ( -30.60) >consensus GCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGCACUGAAAACA__AUCUAUAUGCUGCAGA_AACA____ ((((((...((((((((.((((....)))).)..................(((....))))))))))......))))))..................................... (-31.02 = -31.42 + 0.40)
Location | 21,823,108 – 21,823,201 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.96 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -29.32 |
Energy contribution | -29.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.95 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683148 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21823108 93 - 27905053 ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGUUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGC ..............((((((...(((((((((((((....))))))..................(((....))))))))))......)))))) ( -35.70) >DroSec_CAF1 93563 93 - 1 ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGC ..............((((((...((((((((.((((....)))).)..................(((....))))))))))......)))))) ( -31.50) >DroSim_CAF1 96075 93 - 1 ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGC ..............((((((...((((((((.((((....)))).)..................(((....))))))))))......)))))) ( -31.50) >DroEre_CAF1 99877 93 - 1 ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGCCUCUCUUCUUGC ..............((((((....(((((((.((((....)))).)..................(((....))))))))).......)))))) ( -28.00) >DroYak_CAF1 90967 92 - 1 ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGCUGCACGUGUGCAACUUCAAA-AAAUUGGAUCGGGCGGAAGCCGCUGAGACUCUCUUCUUGC ..............((((((....((((((..((((....))))..(((((.-...)))))...(((....))))))))).......)))))) ( -27.80) >consensus ACUCUCUGCUUGUGGCAAGAUUCCCUCGGCGCUGCACGUGUGCAACAUCAAAAAAAUUGGAUCGGGCGGAAGCCGCUGAGGCUCUCUUCUUGC ..............((((((...((((((((.((((....)))).)..................(((....))))))))))......)))))) (-29.32 = -29.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:02 2006