Locus 8121

Sequence ID 3R_DroMel_CAF1
Location 21,822,376 – 21,822,486
Length 110
Max. P 0.996537
window13062

overview

Window 2

Location 21,822,376 – 21,822,486
Length 110
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 77.30
Mean single sequence MFE -21.06
Consensus MFE -10.88
Energy contribution -12.00
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -3.32
Structure conservation index 0.52
SVM decision value 2.71
SVM RNA-class probability 0.996537
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21822376 110 + 27905053
--------AUUUAUGCACAUUUUGCAUAUUUCUGAAUAUUAUAUUUCAGUUUACAA--AACAACAUUUUUUCCAGUGCACCUGCACGCAUACAAGCAGAAACCCACACCCAUAUGCAACA
--------.............((((((((..(((((........))))).......--..........((((..((((....))))((......)).)))).........)))))))).. ( -19.30)
>DroSec_CAF1 92889 112 + 1
--------AUUUAAGCACAUCUUGCAUAUUUCUGAAUAUAAUAUUUCAGUUUAUCAAAAACAACUUUUCCCAAAGUGCACUUGCACGCACACAAACAGAAACCCACACCCAUGUGCAACA
--------......((((((..((....((((((..............((((.....)))).............((((....)))).........))))))....))...)))))).... ( -20.20)
>DroSim_CAF1 95374 112 + 1
--------AUUUAAGCACAUUCUGCAUAUUUCUGAAUAUUAUAUUUCAGUUUAUCAAAAACAUCUUUUCCCCCAGUGCACUUGCACGCACACAAACAGAAACCCACACCCAUGUGCAACA
--------......((((((..((....((((((..............((((.....)))).............((((....)))).........))))))....))...)))))).... ( -20.20)
>DroYak_CAF1 90246 110 + 1
UCUGCCGAAUUGAAAGAUAUUUUUCAUAUUUCGGUAUAAUGGAA--------AU--AAGACAACCUUUCCCGCAGUGUAGCUGCACGCACACAAGCAGAAACCCACACCCAUGUGCAACA
..(((((((.((((((....))))))...)))))))....((((--------(.--.........))))).((((.....))))..(((((....................))))).... ( -24.55)
>consensus
________AUUUAAGCACAUUUUGCAUAUUUCUGAAUAUUAUAUUUCAGUUUAUCAAAAACAACUUUUCCCCCAGUGCACCUGCACGCACACAAACAGAAACCCACACCCAUGUGCAACA
......................(((((((..(((((........))))).........................((((....))))........................)))))))... (-10.88 = -12.00 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:01 2006