Locus 8120

Sequence ID 3R_DroMel_CAF1
Location 21,821,962 – 21,822,060
Length 98
Max. P 0.752359
window13061

overview

Window 1

Location 21,821,962 – 21,822,060
Length 98
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 90.41
Mean single sequence MFE -42.74
Consensus MFE -32.34
Energy contribution -33.22
Covariance contribution 0.88
Combinations/Pair 1.03
Mean z-score -1.85
Structure conservation index 0.76
SVM decision value 0.48
SVM RNA-class probability 0.752359
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21821962 98 - 27905053
CG--AUGGGUCGGUCG--------G------UGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUGCCCGG
..--.((((.((..((--------(------((((.((((.((....)).........((..(((.(((((.......))))).))).))))))...))).))))..)))))). ( -39.90)
>DroSec_CAF1 92450 108 - 1
CGAGAUGGGUCGGUCGGUUGGCUGG------UGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUGCCCGG
.....((((.((..((((.(((.((------(((..(((((((....))...))))).((..(((.(((((.......))))).))).)))))))...)))))))..)))))). ( -45.20)
>DroSim_CAF1 94959 108 - 1
CGAGAUGGGUCGGUCGGUUGGCUGG------UGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUGCCCGG
.....((((.((..((((.(((.((------(((..(((((((....))...))))).((..(((.(((((.......))))).))).)))))))...)))))))..)))))). ( -45.20)
>DroEre_CAF1 98675 112 - 1
CG--AUGGGUCGAUCGGUCGGUCGGUGCAUGUGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUGCCCGC
..--..(((.(((((((.((((.(((((..((((((.....((....))..)))))).((..(((.(((((.......))))).))).)))))))...)))))))))))))).. ( -48.20)
>DroYak_CAF1 89804 102 - 1
CG--AUGGAUCGCUCGGUCGG----------UGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUACCCGG
((--((.((....)).))))(----------(((..(((((((....))...))))).((..(((.(((((.......))))).))).))))))........((((....)))) ( -35.20)
>consensus
CG__AUGGGUCGGUCGGUCGG__GG______UGCAUGUGCAUCGUGAGAAAGUGUACUGGAGACAUUCCCACAAGUAUUGGGAUUGUGCCGCACUUCUGCUGCCGGUUGCCCGG
.....((((.((((((((..............(((.((((.((....)).........((..(((.(((((.......))))).))).))))))...))).)))))))))))). (-32.34 = -33.22 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:00 2006