| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,818,103 – 21,818,205 |
| Length | 102 |
| Max. P | 0.907973 |
| Location | 21,818,103 – 21,818,205 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Mean single sequence MFE | -24.94 |
| Consensus MFE | -16.40 |
| Energy contribution | -17.26 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.907973 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21818103 102 + 27905053 CAAAAUUAA---AC---------------UCCGUAGAACGCGCGAGUUUUGUUCAAAACUCAACGCUCAUUCUCGGUGCCGACGACCAAAGAUCCGAACAAUGCCACCGGCAUCGAAGAA .........---..---------------..........(((.(((((((....)))))))..)))...((((((((((((..........................)))))))).)))) ( -24.27) >DroVir_CAF1 118517 101 + 1 CAACUUUAU-------------------GAUCGUAGAAUGCGCGAGUUUUAUUCAAAACUCAACGCUCAUUUUCGGUACCAACCACCAAGGAUCCGAAUAAUGCGAGCGGCAUCGAAGAA .........-------------------..((...((.(((..(((((((....)))))))..(((((...(((((..((.........))..)))))......))))))))))...)). ( -25.70) >DroGri_CAF1 102033 99 + 1 AAACUU-----------------C----AAACGUAGAAUGCGAGAGUUUUAUUCAAAACUCAACGCUCAUUUUCGGUACCAACCACCAAGGAUCCGAAUAAUGCUAGCGGCAUCGAAGAA ...(((-----------------(----...(((.....))).(((((((....)))))))..(((((((((((((..((.........))..))))).))))..)))).....)))).. ( -24.90) >DroWil_CAF1 100796 117 + 1 UAAAAUACA---ACUCUGACUCUCAUCGACUCGCAGAAUGCGCGAGUUUUAUUCAAAACUCAACGUUCGUUUUCGGUACCCACGACCAAAGAUCCGAAUAAUGCAACCGGCAUCGAAGAA .........---..........((.((((...((....((((.(((((((....)))))))...(((((((((.(((.......))).))))..)))))..))))....)).)))).)). ( -21.90) >DroMoj_CAF1 123982 108 + 1 CAAUACUGUGCAACC--------C----AAUCGUAGAAUGCGCGAGUUUUAUUCAAAACUCAACGCUCAUUUUCGGUGCCAACCACCAAGGAGCCGAAUAAUGCGAGCGGCAUCGAAGAA .......(((((..(--------.----.......)..)))))(((((((....)))))))........(((((((((((..((.....)).((((.......)).))))))))))))). ( -31.50) >DroAna_CAF1 88035 107 + 1 UAAAUAUAA---AC------AAAC----AUCCGUAGAACGCUAGAGUUUUGUUCAAAACUCAACGGUCAUUCUCGGUGCCAACAACCAAAGAUCCAAACAAUGCUACCGGCAUCGAAGAA .........---..------....----..((((((....)).(((((((....))))))).))))...(((((((((((............................))))))).)))) ( -21.39) >consensus CAAAAUUAA___AC_________C____AAUCGUAGAAUGCGCGAGUUUUAUUCAAAACUCAACGCUCAUUUUCGGUACCAACCACCAAAGAUCCGAAUAAUGCGACCGGCAUCGAAGAA ...................................((.(((..(((((((....)))))))..(((((((((((((.................))))).))))..)))))))))...... (-16.40 = -17.26 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:58 2006