Locus 8115

Sequence ID 3R_DroMel_CAF1
Location 21,809,147 – 21,809,238
Length 91
Max. P 0.995432
window13054

overview

Window 4

Location 21,809,147 – 21,809,238
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 94.18
Mean single sequence MFE -37.44
Consensus MFE -34.36
Energy contribution -35.08
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.92
SVM decision value 2.58
SVM RNA-class probability 0.995432
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21809147 91 - 27905053
CUCGCUCUCCCACGCAUUUGAUUGAGAGCUCACACUGACAGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCUGUGAGCAUGUGUGGGGG
......(((((((((((..........(((((((.((((...(((((((..(....).)))))))...)))).)))))))))))))))))) ( -43.40)
>DroSec_CAF1 79522 91 - 1
CUCGCUCUCCCACGCAUUUGAUUGAGAGCUCACACAGACAGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCAGUAAGCAUGUGUGGGGG
(((((((((.((......))...)))))).(((((((((...(((((((..(....).)))))))...)))((.....)).))))))))). ( -34.50)
>DroSim_CAF1 78622 91 - 1
CUCGCUCUCCCACGCAUUUGAUUGAGAGCUCACACAGACAGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCAGUGAGCAUGUGUGGGGG
......(((((((((((..........((((((...(((...(((((((..(....).)))))))...)))...))))))))))))))))) ( -40.70)
>DroEre_CAF1 84993 91 - 1
CUCGCUCUCUCCCGCAUUUGAUUGAGAGCUCACACAGACGGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCAGUGAGCAUGUAUGGGGG
(((((.(((.(((((.((((.(((.(......).))).))))))))).)))))..((.((((.((......)))))).))......))).. ( -31.70)
>DroYak_CAF1 76943 91 - 1
CUCGCUCUGCCCCACAUUUGAUUGAGCGUUCACACAGACAGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCGGUGAGCAUGUGUGGGGA
.........((((((((..(......)((((((...(((...(((((((..(....).)))))))...)))...))))))..)))))))). ( -36.90)
>consensus
CUCGCUCUCCCACGCAUUUGAUUGAGAGCUCACACAGACAGAGCGGGUGAGGCACGCACACUCGCAAGGUCGCAGUGAGCAUGUGUGGGGG
......(((((((((((..........((((((...(((...(((((((..(....).)))))))...)))...))))))))))))))))) (-34.36 = -35.08 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:52 2006