Locus 8113

Sequence ID 3R_DroMel_CAF1
Location 21,804,152 – 21,804,269
Length 117
Max. P 0.543251
window13051

overview

Window 1

Location 21,804,152 – 21,804,269
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.95
Mean single sequence MFE -46.20
Consensus MFE -24.18
Energy contribution -24.22
Covariance contribution 0.04
Combinations/Pair 1.42
Mean z-score -1.66
Structure conservation index 0.52
SVM decision value 0.02
SVM RNA-class probability 0.543251
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21804152 117 - 27905053
UUGGUCUUCUGCUCAACGUAUUCCCAGCACUUGCCGUGGUGGUGGGUGAAUGUCUUCCAUUCAGUUGGAGUUGCAGCUGAAGCUGCUGACUCUCCGGAUUAUUGAGUAGCAGAGCCG
..(((((.(((((((..(((.((((((((((..((.....))..)))(((((.....))))).))))((((((((((....))))).)))))...))).)))))))))).))).)). ( -48.00)
>DroGri_CAF1 87407 102 - 1
UGGGUCGGCGGUUCAGCGUGCUGCCCGCACUGACGGUCGCUGUUGGCGAAUGUCGGCCAUUCAGUUGGAG---------------UUGAACCUCUGGAGCGCUCAGAAGCAGUGCCG
..(((..((((((((((((((.....))))(((((.((((.....)))).))))).(((......))).)---------------)))))))(((((.....))))).))...))). ( -40.00)
>DroSim_CAF1 73690 117 - 1
UUGGUCUUCUGCUCAACGUAUUCCCAGCACUUGCCGUGGUGGUGGGUGAAUGCCUUCCAUUCAGCUGGAGUUGCAGCUGAAGCUGCUGGCUCUCCGGAGUAUUGAGUAGCAGCGCCG
..(((((.(((((((..((((((((((((((..((.....))..)))(((((.....))))).))))((((((((((....))))).)))))...)))))))))))))).)).))). ( -52.20)
>DroEre_CAF1 80009 117 - 1
UUGGCCUCCUGCUCAACGUGUUCCCAGCACUGGCCGUGGUGGUGGGUGAAUGCCUUCCAUUCAAUUGGAGUUGCAUCUGAAGUUGCUGGCUCUCCGGAGCGUUGAGUAACAGCGCCG
..(((((..((((((((((...((((.((((......)))).))))((((((.....)))))).((((((..(((........))).....)))))).))))))))))..)).))). ( -46.30)
>DroYak_CAF1 71929 117 - 1
UUGGCCUCCGGCUCAACGUGUUCCCAGCACUUGCCGUGGUGGUGGGUGAAUGCCUUCCAUUCAGUUGGAGUUGCAUCUGCAGCUGCUGGCUCUCCGGCGUAUUGAGUAGCAGAGCCG
..(((((.(.((((((.((((.....))))..((((..((((.((((....)))).)))...(((..(((((((....)))))).)..))))..))))...)))))).).)).))). ( -46.40)
>DroAna_CAF1 74035 108 - 1
UUGGCCGGCGGCUUAGCGUGUUCCCGGCACUGGCUGUGGUCGUGGGCGAAUGCCUUCCGUUCAACUGGAGCUG---------CUGCUGACCUUCGGUAGGAUUAAGCAGCAAGGCCG
((.(((.((((((((((((((.....))))..)))).)))))).))).)).(((((..((((.....)))).(---------(((((..(((.....)))....))))))))))).. ( -44.30)
>consensus
UUGGCCUCCGGCUCAACGUGUUCCCAGCACUGGCCGUGGUGGUGGGUGAAUGCCUUCCAUUCAGUUGGAGUUGCA_CUGAAGCUGCUGACUCUCCGGAGUAUUGAGUAGCAGAGCCG
..(((((.(.((((((...(((((((.(((.....))).))).))))(((((.....)))))..((((((..(((........))).....))))))....)))))).).)).))). (-24.18 = -24.22 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:50 2006