Locus 8111

Sequence ID 3R_DroMel_CAF1
Location 21,789,474 – 21,789,570
Length 96
Max. P 0.803312
window13049

overview

Window 9

Location 21,789,474 – 21,789,570
Length 96
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 79.91
Mean single sequence MFE -28.32
Consensus MFE -19.13
Energy contribution -19.22
Covariance contribution 0.09
Combinations/Pair 1.40
Mean z-score -1.84
Structure conservation index 0.68
SVM decision value 0.62
SVM RNA-class probability 0.803312
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21789474 96 - 27905053
GUAACUUUGUUCUGGUUAGCAUGGU-------------------UGAUUGACUAGUUAAUUGAUUGAAUUACUCAAUAAAGGAAUUCACUUAAACCAUAUUUGCAAUGGAAUUUU
...........((((((((((....-------------------)).))))))))....((((.((((((.((......)).)))))).)))).((((.......))))...... ( -15.30)
>DroSec_CAF1 56945 115 - 1
GUACCUUUGUAUUGGUUAGCUUGGUGGCUUGUUGAAAGCCAAGUCGAUUGACUGGUUAAUUGAUUGAAUUACUCAACAAGGGAAUUCAGUUGAACCAUAUAUGCAAUGGAAUUUU
...((.(((((((((((((((...((((((.....))))))((((((((((....))))))))))(((((.(((.....))))))))))))).))))...)))))).))...... ( -34.40)
>DroSim_CAF1 57911 115 - 1
GUACUUUUGUAUUGGUUAACUUGGUGGCUUGUUGAAAGCCAAGUCGAUUGACUGGUUAAUUGAUUGAAUUACUCAACAAGGGAAUUCAGUUGAACCAUAUUUGCAAUGGAAUUCU
...((.(((((.(((((((((...((((((.....))))))((((((((((....))))))))))(((((.(((.....))))))))))))).))))....))))).))...... ( -32.40)
>DroEre_CAF1 64998 115 - 1
GUGCCUUUGUUCUGGUUGGCUUGGUGGCUUGUUAAAAGCGGAGUGGAUUGUCUGGGUAAUUGAUUGAAUUAUUCAAUAAGGGGAUUCAGUCGAAUCAUAUUUGCAGGGGAAUUUU
...(((((((..(((((.........((((.....)))).((.((((((.(((((((((((.....))))))))....))).)))))).)).))))).....)))))))...... ( -28.20)
>DroYak_CAF1 56810 115 - 1
GUGCCUUUGUUCUGGUUAACUUGGUGGCUUGUUGAAAGCCAAGACGACUGAGUGGGUAAUUGAUUGAAUUAUUCAAUAAGGAAAUUCAAUUGAGCCAAAUUUGCACUAGAAUUUU
........((((((((..(((..((.(((((.(....).)))).).))..))).(((..(..((((((((.(((.....)))))))))))..))))........))))))))... ( -31.30)
>consensus
GUACCUUUGUUCUGGUUAGCUUGGUGGCUUGUUGAAAGCCAAGUCGAUUGACUGGUUAAUUGAUUGAAUUACUCAAUAAGGGAAUUCAGUUGAACCAUAUUUGCAAUGGAAUUUU
...((.(((((((((((((.....((((((.....))))))......)))))))))...(((((((((((.(((.....)))))))))))))).........)))).))...... (-19.13 = -19.22 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:47 2006