| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,754,568 – 2,754,663 |
| Length | 95 |
| Max. P | 0.785474 |
| Location | 2,754,568 – 2,754,663 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.20 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2754568 95 + 27905053 --GCAGUCUGAAGGCUCCAGUUCGAGUUGU-UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC------UAACAACAAGCAACUGCAGCGAC---- --(((.((..(..((((......))))..)-..)).)))(((((((.((((((((......)))))))).)))))------.........((....)).))...---- ( -29.00) >DroPse_CAF1 53293 104 + 1 --GAAG--UGGAGGCUAAAGCUCUGGUAGUCUGUAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCUCAGUAAACAACAACAAGCAGCAGCAACAACAAGC --...(--(....(((...(((((.((.((.(((..(((.((.(((.((((((((......)))))))).))).))))).))))).)).)).))))))....)).... ( -22.10) >DroSim_CAF1 32799 97 + 1 CUGCAGUCUGAAGGCUCCAGUUCGAGUUGU-UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC------UAACAACAAGCAACUGCAGCGAC---- ((((((((..(..((((......))))..)-..))((....(((((.((((((((......)))))))).)))))------.....))......))))))....---- ( -29.80) >DroEre_CAF1 31605 87 + 1 ----------ACGUCUCCAGUUGGAGUUGU-UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC------UAACAACAAGCAACUGCAGCGAC---- ----------.((.((.((((((..(((((-(((.(((((((((((((.....)))))).)))))......)).)------)))))))...)))))).))))..---- ( -28.40) >DroYak_CAF1 30230 95 + 1 --GCAGUCUGAAGUCUCCAGUUCGAGUUGU-UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC------UAACAACAAGCAACUGCAGCGAC---- --(((.((..(...(((......)))...)-..)).)))(((((((.((((((((......)))))))).)))))------.........((....)).))...---- ( -26.10) >DroAna_CAF1 28077 78 + 1 ----------------------GAAGUUGU-UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC------UAACAACAAGCAACUGCAGCUAC-AGC ----------------------...((.((-((.(((((..(((((.((((((((......)))))))).)))))------.........)).))).)))).))-... ( -21.80) >consensus __GCAG__UGAAGGCUCCAGUUCGAGUUGU_UGGAGUGCGUGUGUUAUUCAAUAUAACAGCAUGUUGAACAGCAC______UAACAACAAGCAACUGCAGCGAC____ ........................((((((.((..((....(((((.((((((((......)))))))).)))))........))..)).))))))............ (-16.94 = -17.30 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:45 2006