Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,780,373 – 21,780,478 |
Length | 105 |
Max. P | 0.768389 |
Location | 21,780,373 – 21,780,478 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -16.09 |
Consensus MFE | -1.65 |
Energy contribution | -4.57 |
Covariance contribution | 2.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.10 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21780373 105 - 27905053 GCAAUUUUUAAUUAAUAUCAAUCAACUCUGAAGAUUUAUCCAGAAAUGUCAAAU-----CGUUU----UAAGAGUUUCUGCUUAAAACACUUUAAUUAAACAUUGCUCGAAUUA (((((.(((((((((.................(((((...((....))..))))-----)((((----((((........))))))))...))))))))).)))))........ ( -21.60) >DroSec_CAF1 46779 104 - 1 -CAAUUUUUAAUUAAUAUCAACCAACUCUGAAGAUUUAUCCAAAAAUGUCAAAU-----CGUUU----UUAGAGUUCUUGCUUAACACACUUUAAUUAAACAUUGCUCGAAUUA -((((.(((((((((........((((((((((((...................-----.))))----))))))))..((.....))....))))))))).))))......... ( -13.45) >DroSim_CAF1 48969 96 - 1 GCAAUUUUUAAUUAAUAUCAACCAACUGUGAAGAUUUAUCCAGAAAUGUCAAAU-----CGCUU----UUAGAGUUCUUGCU---------UUAAUUAAACAUUGCUCAAAUUA (((((.(((((((((...(((..((((.(((((((((...((....))..))))-----)...)----))).)))).)))..---------))))))))).)))))........ ( -18.90) >DroEre_CAF1 55728 99 - 1 ACAAUUUUUAAUUAAAAUCAAA-------CAAGAUUUACGCAGAAACAAGAUUUUACCACGUUGUUGUAAAGAGUUUUUGCCUAACACAUUUUAAUUAU-----ACUCAAA--- ........(((((((((((...-------...)))))..((((((((....((((((.((...)).)))))).))))))))...........)))))).-----.......--- ( -13.40) >DroYak_CAF1 47521 104 - 1 GCAAUUUUUAAUUAAAAUCUACGAGCUCUGAAGAUUUAUCCAGAAAUGUCAAAU-----AAGUGUUGCUUUGAGUUUUGGCUUAACACACUUUAAUUAU-----ACUAAAAUUA (((((.((((....((((((.((.....)).))))))...((....)).....)-----))).)))))....((((((((..(((..........))).-----.)))))))). ( -13.10) >consensus GCAAUUUUUAAUUAAUAUCAACCAACUCUGAAGAUUUAUCCAGAAAUGUCAAAU_____CGUUU____UUAGAGUUUUUGCUUAACACACUUUAAUUAAACAUUGCUCAAAUUA (((((.(((((((((.(((.............))).....(((((((..........................)))))))...........))))))))).)))))........ ( -1.65 = -4.57 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:45 2006