Locus 8108

Sequence ID 3R_DroMel_CAF1
Location 21,780,251 – 21,780,344
Length 93
Max. P 0.917082
window13046

overview

Window 6

Location 21,780,251 – 21,780,344
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 94.98
Mean single sequence MFE -12.92
Consensus MFE -12.04
Energy contribution -11.93
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.29
Structure conservation index 0.93
SVM decision value 1.11
SVM RNA-class probability 0.917082
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21780251 93 - 27905053
GGUUCAAAUAAACAAUACAGGAAAACAGAAAACUAAUUAUUUUCAAUUAAGAACGAAAGCCUGCGUAGUAAAGUAAAGAGCAGGAAAAUAAAG
.((((..............(.....).(((((.......)))))......)))).....(((((...............)))))......... ( -11.86)
>DroSec_CAF1 46668 93 - 1
AGUUAAAAUAAACAAUACAGGAAAACAGAAAACUAAUUAUUUUCAAUUAAAAACGAAAGCCUGCGCUGUAAAGUAGAGAGCAGGAAAAUAAAG
.(((......))).......................((((((((.........(....).((((.((.((...)).)).)))))))))))).. ( -13.60)
>DroSim_CAF1 48847 93 - 1
AGUUAAAAUAAACAAUACAGGAAAACAGAAAACUAAUUAUUUUCAAUUAAAAACGAAAGCCUGCGCUGUAAAGUAGAAAGCAGGAAAAUAAAG
.(((......))).......................((((((((.........(....).((((.(((.....)))...)))))))))))).. ( -13.30)
>consensus
AGUUAAAAUAAACAAUACAGGAAAACAGAAAACUAAUUAUUUUCAAUUAAAAACGAAAGCCUGCGCUGUAAAGUAGAGAGCAGGAAAAUAAAG
....................................((((((((.........(....).((((.(((.....)))...)))))))))))).. (-12.04 = -11.93 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:44 2006