Locus 8107

Sequence ID 3R_DroMel_CAF1
Location 21,768,412 – 21,768,527
Length 115
Max. P 0.514928
window13045

overview

Window 5

Location 21,768,412 – 21,768,527
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.00
Mean single sequence MFE -41.48
Consensus MFE -25.17
Energy contribution -27.38
Covariance contribution 2.22
Combinations/Pair 1.31
Mean z-score -1.51
Structure conservation index 0.61
SVM decision value -0.04
SVM RNA-class probability 0.514928
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21768412 115 + 27905053
CUUUUCCAUCUGACACAUUCAAUUUGGUCAGGCACAGCUGCUCAGCGGGUUAGUUGCCAUUUUCCUGGGCUUUUUCAGGCGAGGGGGAGGAAGAUGAGCGGCACCACAUGCCGCA-----
.((((((.((((((.((.......))))))))..((((((((.....)).))))))...((..(((.(.((.....)).).)))..))))))))...((((((.....)))))).----- ( -40.60)
>DroSec_CAF1 35234 115 + 1
CUUUUCCAUCUGACACAUUCAAUUUGGUCGAGCGCAGCUGCUCGGCGGGAUAGUUGCCAUAUUCCUGGGUUUUUCCAGGGGAGGGGGAGGAAGAUGAGCGGCACCACAUGCCGCA-----
......(((((..(.......((((.((((((((....)))))))).))))..((.((...((((((((....))))))))..)).)))..))))).((((((.....)))))).----- ( -47.00)
>DroSim_CAF1 36420 115 + 1
CUUUUCCAUCUGACACAUUCAAUUUGGUCGAGCGCAGCUGCUCGACGGGAUAGUUGCCAUUUUCCUGGGUUUUUCCAGGGGAGGGGGAGGAAGAUGAGCGGCACCACAUGCCGCA-----
......(((((..(.......((((.((((((((....)))))))).))))..((.((.((..((((((....))))))..)))).)))..))))).((((((.....)))))).----- ( -49.90)
>DroEre_CAF1 43816 115 + 1
CUUUUCCAUCUGACACAUUCAAUUUGGUGGAGCCCAGCUGCUCGGCGGGAUAGUUGCCAUUUUCCUGCGCUUUUCCAGGGGAGGGGGCGGAAGAUGAGCGGCACCACAUGUCGCU-----
...........((((((.......))((((..(((.(((....))))))...(((((((((((((.((.((((((....)))))).)))))))))).))))).)))).))))...----- ( -45.00)
>DroYak_CAF1 35826 115 + 1
CUUUUCCAUCUGACACAUUCAAUUUGGUCGAGCGCAGCUGCUCAGCGGGAUAGUUGCCAUUUUCCUGGGCUUUUCCAGCGGAGGGGGAGGAAGAUGAGCGGCACCACAUGUCGAU-----
.......(((.((((......((((.((.(((((....))))).)).)))).((((((((((((((...(((((((...))))))).))))))))).)))))......)))))))----- ( -37.30)
>DroPer_CAF1 41307 99 + 1
CUUUCUUUUCUGACACAUUCAAUUUGGUCACCCACAGCAGCUUUGUGGGGCAAGCGGCA-------------------GGAAGCAGGUGGA--UUGAGAAGCACCACAUGUUGCCACUUG
..........((((.((.......))))))(((((((.....))))))).((((.((((-------------------....(((.((((.--..........)))).))))))).)))) ( -29.10)
>consensus
CUUUUCCAUCUGACACAUUCAAUUUGGUCGAGCGCAGCUGCUCGGCGGGAUAGUUGCCAUUUUCCUGGGCUUUUCCAGGGGAGGGGGAGGAAGAUGAGCGGCACCACAUGCCGCA_____
......(((((..(.......((((.((.((((......)))).)).))))..((.((.((((((((((....)))))))))))).)))..))))).((((((.....))))))...... (-25.17 = -27.38 +   2.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:43 2006