Locus 8106

Sequence ID 3R_DroMel_CAF1
Location 21,766,316 – 21,766,423
Length 107
Max. P 0.862809
window13044

overview

Window 4

Location 21,766,316 – 21,766,423
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.61
Mean single sequence MFE -24.66
Consensus MFE -23.24
Energy contribution -23.04
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.35
Structure conservation index 0.94
SVM decision value 0.84
SVM RNA-class probability 0.862809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21766316 107 - 27905053
AAAUAGAAAGAGUAUUGGCCAUUUAUGCGAUUUAUUUAUUGUGUAUGAAAGGCGCAGCUGUGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUGUAU-------------
..............((((((.((((((((............)))))))).)))((((.((.((((((.(((....)))..))))).).))))))...))).......------------- ( -23.70)
>DroSec_CAF1 33163 107 - 1
AAAUAGAAAGAGUAUUGGCCAUUUAUGCGAUUUAUUUAUUGUGUAUGAAAGGCGCAGCUGUGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUGUAU-------------
..............((((((.((((((((............)))))))).)))((((.((.((((((.(((....)))..))))).).))))))...))).......------------- ( -23.70)
>DroSim_CAF1 34326 107 - 1
AAAUAGAAAGAGUAUUGGCCAUUUAUGCGAUUUAUUUAUUUUGUAUGAAAGGCGCAGCUGUGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUAUAU-------------
...........(((((.(((.(((((((((..........))))))))).)))((((.((.((((((.(((....)))..))))).).))))))......)))))..------------- ( -26.30)
>DroEre_CAF1 41666 120 - 1
AAAUAGAAAGAGUAUUGGCCAUUUAAGCGAUUUAUUUAUUGUGUUUGAAAGGCGCAGCUGCGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUGUAUACAAAACCAACGA
.........(.((.((((((.((((((((............)))))))).)))((((.((.((((((.(((....)))..))))).).))))))..............))).)))..... ( -24.10)
>DroYak_CAF1 33663 120 - 1
AAAUAUAAAGAGUAUUGGCCAUUUAUGCGAUUUAUUUAUUGUGUUUGAGAGGCGCAGCUGUGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUGUAUUCAAAACCAACGA
.........((((((..(((.((((.(((((......)))))...)))).)))((((.((.((((((.(((....)))..))))).).)))))).........))))))........... ( -25.50)
>consensus
AAAUAGAAAGAGUAUUGGCCAUUUAUGCGAUUUAUUUAUUGUGUAUGAAAGGCGCAGCUGUGCGAUUUGAUUUCCAUCUUAAUCGACUCACUGCAAACAAAAUGUAU_____________
..............((((((.((((((((............)))))))).)))((((.((.((((((.(((....)))..))))).).))))))...))).................... (-23.24 = -23.04 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:42 2006