Locus 8105

Sequence ID 3R_DroMel_CAF1
Location 21,760,695 – 21,760,792
Length 97
Max. P 0.744848
window13043

overview

Window 3

Location 21,760,695 – 21,760,792
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.51
Mean single sequence MFE -20.86
Consensus MFE -15.41
Energy contribution -15.17
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.74
SVM decision value 0.46
SVM RNA-class probability 0.744848
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21760695 97 - 27905053
ACCCGCAUUUAUCACAACAGAUAAGUGCG--CACA--UAUCCUUGUGGCUUAUUUCC---CAUUGCCCCAU-------UCCUCAUAGCUUUGUAAUCAUUCUCCGGAAGUG
...((((((((((......))))))))))--((((--......))))...(((((((---((..((.....-------........))..))............))))))) ( -19.82)
>DroSec_CAF1 27449 97 - 1
ACCCGCAUUUAUCACAACAGAUAAGUGCG--CACA--UAUCCUUGUGGCUUAUUUCC---CAUUGCCCCAU-------UCCUAAAAGCUUUGUAAUCAUGCCCCGGAAGUG
...((((((((((......))))))))))--..((--(.(((.((.(((........---....))).)).-------........((..((....)).))...))).))) ( -21.60)
>DroSim_CAF1 27833 97 - 1
ACCCGCAUUUAUCACAACAGAUAAGUGCG--CACA--UAUCCUUGUGGCUUAUUUCC---CAUUGCCCCAU-------UCCUAAGAGCUUUGUAAUCAUGCCCCGGAAGUG
...((((((((((......))))))))))--(((.--......((.(((........---....))).))(-------(((...(.((..((....)).)))..))))))) ( -21.90)
>DroEre_CAF1 36073 97 - 1
ACCCGCAUUUAUCACAGCAGAUAAGUGUGCGCACA--CAUCCUUGUGGCUUGUUUCC---CAUUGCCCCAU-------UCCA--AAGCUUUGUAAUCAUUCUCCGGAAGUG
...((((((((((......)))))))))).((.((--((....))))))........---..........(-------(((.--.((...((....))..))..))))... ( -19.90)
>DroYak_CAF1 27939 98 - 1
ACCCGCAUUUAUCACAACAGAUAAGUGCGCACACA--CAUCCUUGUGGCUUAUUUCC---CAUUGCCCCAU-------UCCA-GAAGCUUUGUAAUCAUUCUCCGGAAGUG
...((((((((((......))))))))))....((--(.(((.((.(((........---....))).)).-------...(-(((............))))..))).))) ( -22.30)
>DroPer_CAF1 33408 107 - 1
ACCCGCAUACAUCAUAACAGAUAUGUGCG--CACAUUUGUCUUUGUGCUAU-UUUCCCUCCACUUCCUCUUCCUAUCCUCCUAUCCACUCUACAAUCAUU-UGCGGAAGUU
....(((((.(((......))).)))))(--((((........)))))...-.........((((((.(...............................-.).)))))). ( -19.65)
>consensus
ACCCGCAUUUAUCACAACAGAUAAGUGCG__CACA__UAUCCUUGUGGCUUAUUUCC___CAUUGCCCCAU_______UCCUAAAAGCUUUGUAAUCAUUCUCCGGAAGUG
.((((((((((((......))))))))))..((((........)))).........................................................))..... (-15.41 = -15.17 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:41 2006