| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,760,102 – 21,760,205 |
| Length | 103 |
| Max. P | 0.925223 |
| Location | 21,760,102 – 21,760,205 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.78 |
| Mean single sequence MFE | -18.23 |
| Consensus MFE | -11.81 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21760102 103 - 27905053 GGGUGGCACUUAAAAAACACUAAAAAAAAGGAGAUCGCACC--CAAAAAAAAUACGAUUGUGUAAAUUAUGCAAAUCGUAAAAGCGCUGAAAUCCGCGCCUAAGG ((((((..(((...................)))..).))))--)........(((((((.((((.....)))))))))))...((((.(....).))))...... ( -21.61) >DroPse_CAF1 33707 98 - 1 GGAUGACACUUAAAAAGUCGUAAAAAAUUCGAGAGG-------AAACGAAAAAACGAUUGUGUAAAUUAAGCAAAUCGUUAAAGCGCUGAAAUCGGAGCCUAAGG (((((((.........)))))......(((((..(.-------...).....(((((((.(((.......))))))))))............))))).))..... ( -16.90) >DroGri_CAF1 36627 99 - 1 -AGAGGCACUUAAAAAAUCGUAAAAAAA----AAUAGCAGCUGAAACGCAAGAUUAA-GUUGUAAAUUAUGCAAAUGGCAAAAGCGUUGAAAUCCGCGCCUAAGG -..((((.....................----....((((((.((.(....).)).)-)))))......(((.....)))...(((........))))))).... ( -19.40) >DroSim_CAF1 27233 102 - 1 GGGUGGCACUUAAAAAACACUAAAA-AAAGAAGAUCGCGCC--AAAAAAAAAUACGGUUGUGUAAAUUAUGCAAAUCGUAAAAGCGCUGAAAUCCGCGCCUAAGG ...((((.(................-..........).)))--)........(((((((.((((.....)))))))))))...((((.(....).))))...... ( -17.57) >DroEre_CAF1 35496 78 - 1 GG---GCACUUAAAAAACUCUAAAA------------------------AAAUACGAUUGUGUAAAUUAUGCAAAUCGUAAAAGCGCUGAAAUCCGCGCCUAAGG ((---((..................------------------------...(((((((.((((.....)))))))))))...(((........))))))).... ( -17.50) >DroAna_CAF1 29223 88 - 1 GGGUGGCACUUAAAAAAUCGUAAAAAAAA-----------------GAAACGGGCGGUUGUGUAAAUUAUGCAAAUCGUAAAAGCGCUGAAAUCCGCGCCUAAGG ....(((..........((((........-----------------...))))((((..((((...(((((.....)))))..))))......)))))))..... ( -16.40) >consensus GGGUGGCACUUAAAAAACCCUAAAAAAAA___GAU________AAAAAAAAAUACGAUUGUGUAAAUUAUGCAAAUCGUAAAAGCGCUGAAAUCCGCGCCUAAGG ........((((........................................(((((((.((((.....)))))))))))...((((.(....).)))).)))). (-11.81 = -12.37 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:40 2006