Locus 8103

Sequence ID 3R_DroMel_CAF1
Location 21,756,845 – 21,756,936
Length 91
Max. P 0.748008
window13041

overview

Window 1

Location 21,756,845 – 21,756,936
Length 91
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 76.87
Mean single sequence MFE -24.28
Consensus MFE -12.33
Energy contribution -11.92
Covariance contribution -0.41
Combinations/Pair 1.33
Mean z-score -1.96
Structure conservation index 0.51
SVM decision value 0.47
SVM RNA-class probability 0.748008
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21756845 91 - 27905053
GAACCAACU----------------AUUCUGAGGAGUGCCUUGAAUUUAUGAG---UUCGCCAGACAAAU----GAAGUUGUCUGCAGACGCAUAUUAAAGUGCUUACUUAGU----G
.........----------------...((((((((..(.((((...((((.(---(..((.((((((..----....))))))))..)).)))))))).)..))).))))).----. ( -24.60)
>DroSec_CAF1 23569 91 - 1
AAACCAACU----------------AUUCUAAGGAGUGCCUUGAAUUUAUGAG---UUCGCCAGACAAAU----GAAGUUGUCUGCAGACGCAUAUCAAAGUGCUUACUUAGU----G
.........----------------...((((((((..(.((((...((((.(---(..((.((((((..----....))))))))..)).)))))))).)..))).))))).----. ( -26.70)
>DroSim_CAF1 23809 91 - 1
AAACCAACU----------------AUUCUAAGGAGUGCCUUGAAUUUAUGAG---UUCACCAGACAAAU----GAAGUUGUCUGCAGACGCAUAUCAAAGUGCUUACUUAGU----G
.........----------------...((((((((..(.((((...((((.(---((...(((((((..----....)))))))..))).)))))))).)..))).))))).----. ( -25.00)
>DroEre_CAF1 32124 91 - 1
AAACCAAUU----------------UUUCUGAGAAGUGCCUGGAAUUUAUGAG---UCCGCCAGACAAAU----GAAGUUGUCUGCAGACGCAUAUCAAACUGCUUACUUAGU----G
.........----------------...(((((((((.....((...((((.(---((.((.((((((..----....)))))))).))).)))))).....)))).))))).----. ( -22.50)
>DroYak_CAF1 23890 88 - 1
---CCAACU----------------UCUCUGAGAAGUGCCUUGAAUUUAUGAG---UCCAGCAGACAAAU----GAAGUUGUCUGCAGACGCAUAUCAAACUGCUUACUUAGU----G
---......----------------...((((((((((..((((...((((.(---((..((((((((..----....)))))))).))).))))))))..))))).))))).----. ( -27.10)
>DroAna_CAF1 25670 118 - 1
GAAUCAUCUCUGAACUCCUUAAAAAAGCUUUAAGAGCACCUUGAAUUUAUUAUUGAUUGGCUGGACCACCUUUAUAAGUUGUCUGCCGGCGAAAAUCAAACCGCUUACUUACUGGCUG
.........................((((.(((((((...((((.(((....(((.(((((.((((.((........)).)))))))))))))))))))...)))..))))..)))). ( -19.80)
>consensus
AAACCAACU________________AUUCUGAGGAGUGCCUUGAAUUUAUGAG___UUCGCCAGACAAAU____GAAGUUGUCUGCAGACGCAUAUCAAACUGCUUACUUAGU____G
............................((((((((((..((((...((((.....((...(((((((..........)))))))..))..))))))))..))))).)))))...... (-12.33 = -11.92 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:39 2006