Locus 8102

Sequence ID 3R_DroMel_CAF1
Location 21,750,033 – 21,750,153
Length 120
Max. P 0.586703
window13040

overview

Window 0

Location 21,750,033 – 21,750,153
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -47.85
Consensus MFE -30.79
Energy contribution -31.60
Covariance contribution 0.81
Combinations/Pair 1.28
Mean z-score -1.75
Structure conservation index 0.64
SVM decision value 0.11
SVM RNA-class probability 0.586703
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21750033 120 - 27905053
GACGAACGCCCGUGUGGUAAUCUGCGAACGUCCCACCAAGGUGGUUACCGUGCCAGCCAUGUCGGAGGUAUGAUAGCUGGCCCACACCAGCCGGAAAAGAUCCGCGUUCUCGAUUCAUGG
((.((((((..((((((..........(((..((((....))))....)))((((((..(((((......))))))))))))))))).....(((.....)))))))))))......... ( -42.40)
>DroVir_CAF1 35026 120 - 1
GACGAACGCCCGGGUCGUCAUCUGCGAACGGCCCAACAAGGUAAUCACCGUGCCGGCUAUGUCAGAGGUAUGAUAGCUGGCGCAUUCAACCCGCAAGCGUUCAACGUUUGCGGUCCACGG
...(((.....((((((((......).))))))).....(((....)))(((((((((..((((......))))))))))))).)))...(((((((((.....)))))))))....... ( -48.80)
>DroGri_CAF1 25083 120 - 1
GGCAAACGCACGGGUCGUCAUUUGCGAGCGGCCCAAUAAGGUUAUCACUGUGCCGGCUAUGUCGGAAGUAUGAUAGCUGGCGCAUUCGACACGCAAACGUUCAACGUUUGCGGUCCAUGG
.((....))..((((((((......)).))))))..............(((((((((((((((....).)).))))))))))))...(((.((((((((.....)))))))))))..... ( -49.80)
>DroWil_CAF1 23838 120 - 1
GACAAAUGCACGGGUUGUGAUUUGUGAGAGGCCCAAUAAGAUUAUCACAGUGCCAGCCAUGUCGGAGGUAUGAUAGCUGGCACAUACGACCCGCAAACGUUCAACGUUUGCGGUCCAUGG
(((........((((((((...(((((....(.......)....)))))((((((((..(((((......))))))))))))).))))))))(((((((.....))))))).)))..... ( -47.90)
>DroMoj_CAF1 28439 120 - 1
GGCGAACGCCCGGGUCAUCAUCUGCGAGCGGCCCAACAAGGUAAUCACUGUGGCUGCCAUGUCGGAGGUAUGAUAGCUGGCGCACUCGACCCGCAGGCGUUCAACGUUUGCGGUCCGUGG
.......(((((((((((.((((.(((((((((..(((..(....)..)))))))))....))).)))))))))..)))).)).(.((..(((((((((.....)))))))))..)).). ( -47.20)
>DroAna_CAF1 18715 120 - 1
GGCCAAUGCCCGGGUCGUCAUCUGCGAGAGGCCCAGCAAGGUGGUGACCGUGCCGGCCAUGUCGGAGGUAUGAUAGCUGGCACACACCACCCGCAAGCGUUCAACUUUCGCGGUCCACGG
((((........))))((...(((((((((....(((..(((((((...((((((((..(((((......))))))))))))).)))))))(....).)))...)))))))))...)).. ( -51.00)
>consensus
GACGAACGCCCGGGUCGUCAUCUGCGAGCGGCCCAACAAGGUAAUCACCGUGCCGGCCAUGUCGGAGGUAUGAUAGCUGGCGCACACGACCCGCAAACGUUCAACGUUUGCGGUCCAUGG
...........(((((.............))))).....((........((((((((..(((((......))))))))))))).......(((((((((.....))))))))).)).... (-30.79 = -31.60 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:38 2006