Locus 8101

Sequence ID 3R_DroMel_CAF1
Location 21,747,362 – 21,747,471
Length 109
Max. P 0.948677
window13039

overview

Window 9

Location 21,747,362 – 21,747,471
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 92.39
Mean single sequence MFE -21.54
Consensus MFE -18.12
Energy contribution -18.76
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.79
Structure conservation index 0.84
SVM decision value 1.38
SVM RNA-class probability 0.948677
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21747362 109 + 27905053
ACCAGUGCUUCUUUUCGAGAGGUCCACACUGGAACUUCUACUUUUACGAACCCGUGCAUUUCGCACCUCCUUGCAAGUGCACAUCCGCUUCCGUUCUCGUUCCAACUUC
.((((((((((((...))))))....))))))...............((((..((((((((.(((......)))))))))))...((....)).....))))....... ( -26.90)
>DroSec_CAF1 14111 109 + 1
ACCAGUGCUUCUUUUUAAGAGGUCCACACUCGAACUCCUACUUUUACGAACCCGUGCAUUUCGCACCUCCUUGCAAGCGCACAUCCGCUUCCGUUCUCGUUCCAACUUC
....(..(((((.....)))))..)......((((..................((((.....))))......(.(((((......))))).)))))............. ( -19.00)
>DroSim_CAF1 14299 109 + 1
ACCAGUGCUUCUUUUUAACAGGUCCACACUCGAACUCCUACUUUUACGAACCCGUGCAUUUCGCACCUCCUUGCAAGCGCACAUCCGCUUCCGUUCUCGUUCCAACUUC
....(((..(((.......)))..)))....((((..................((((.....))))......(.(((((......))))).)))))............. ( -16.50)
>DroEre_CAF1 22455 109 + 1
ACCAGUGCUUCUUUUCGAGAGAUCCACGCUGGAACUCCUGCUUUUACGAACCCGUGCAGUUCGCACCUCCUUGCAAGCGCACAUCCGCUUCCGUUCCCACUCCAACUUC
....(((..((((.....))))..)))...(((((..((((....(((....)))))))...(((......)))(((((......)))))..)))))............ ( -23.50)
>DroYak_CAF1 14298 109 + 1
ACCAGUGCUUCUUUUCACGAGAUCCACACUGGAACUCCUGCUUUUACGAACCCGCUCAUUUCGCACCUCCUUGCUAGCGCACAUCCGCUUCCGUUCGCGCUCCAACUUC
...(((((.......((.(((.(((.....))).))).)).......((((..((.......))........(..((((......))))..))))))))))........ ( -21.80)
>consensus
ACCAGUGCUUCUUUUCAAGAGGUCCACACUGGAACUCCUACUUUUACGAACCCGUGCAUUUCGCACCUCCUUGCAAGCGCACAUCCGCUUCCGUUCUCGUUCCAACUUC
.((((((..((((.....))))....))))))...............((((..((((.....))))......(.(((((......))))).)))))............. (-18.12 = -18.76 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:37 2006