Locus 8100

Sequence ID 3R_DroMel_CAF1
Location 21,746,988 – 21,747,086
Length 98
Max. P 0.752805
window13038

overview

Window 8

Location 21,746,988 – 21,747,086
Length 98
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -32.33
Consensus MFE -16.86
Energy contribution -16.62
Covariance contribution -0.24
Combinations/Pair 1.35
Mean z-score -1.86
Structure conservation index 0.52
SVM decision value 0.48
SVM RNA-class probability 0.752805
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21746988 98 + 27905053
--------AACUUUUGCCGGGGAAUUGGACAAUUGCGGACGUAAGGUGGAUAGGUCAUGGCCGGAAGGCAGACAAUAUUAUCCUGUCUGUGGUUAGAAGAUCUAGA
--------..(((((((((.(((...(((((.((((....))))..))((((.(((...(((....))).)))..)))).)))..))).))).))))))....... ( -29.90)
>DroSec_CAF1 13737 98 + 1
--------AACUUUUGCCGGGGAAUUGGACAAUUGCGGACGUAAGGUGGAUAGGUCAUGGCCGGAAGGCAGACAAUAUUAUCCUGUCUGUGGUUAGAAGAUCGAGA
--------..(((((((((.(((...(((((.((((....))))..))((((.(((...(((....))).)))..)))).)))..))).))).))))))....... ( -29.90)
>DroSim_CAF1 13925 98 + 1
--------AACUUUUGCCGUGGAAUUGGACAAUUGCGGACGUAAGGUGGAUAGGUCAUGGCCGGAAGGCAGACAAUAUUAUCCUGUCUGUGGUUAGAAGAACGAGA
--------..(((((((((..((...(((((.((((....))))..))((((.(((...(((....))).)))..)))).)))..))..))).))))))....... ( -30.50)
>DroEre_CAF1 22081 98 + 1
--------AAUUUUCGCCGGGGAAUCGGUUGAUUGCGGACGUAAGGGGGAUACGUCAUGGCCGGAAGGCAGAUAAUUUUAUCUUGCCGGAGGUUAGAGGAUCGGGA
--------(((((((.(((((.((((....)))).).((((((.......))))))....))))..((((((((....)))).)))))))))))............ ( -28.70)
>DroYak_CAF1 13924 98 + 1
--------AAUUUUCGCCGGGGAAUCGGUGGAUUGCGGACGUAAGGUGGAUACGUCAUGGCCGGAAGGCAGACAAUAUUAUCUUGUCGGUGGUUGGAGGAUCGGGA
--------.(((((((((((....))))).(((..(.((((..((((((....(((...(((....))).)))....)))))))))).)..))).))))))..... ( -32.00)
>DroAna_CAF1 15792 93 + 1
GCGGCAGAAGCCUUCGCCGCGGAGUCGAUCCACUGCGAGGGCAAGGCGGAUAGGUCAUGGCCGGCGAGCAGAGAGUCUGGACCACCCUGCUGC-------------
(((((((..((((((((.(.(((.....))).).))))))))..((.((...(((....)))......(((.....)))..)).)))))))))------------- ( -43.00)
>consensus
________AACUUUCGCCGGGGAAUCGGACAAUUGCGGACGUAAGGUGGAUAGGUCAUGGCCGGAAGGCAGACAAUAUUAUCCUGUCUGUGGUUAGAAGAUCGAGA
.........((((((((((...((((....)))).))).)).)))))(((((((((...(((....))).)))....))))))....................... (-16.86 = -16.62 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:36 2006