Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,752,535 – 2,752,639 |
Length | 104 |
Max. P | 0.624615 |
Location | 2,752,535 – 2,752,639 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.81 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -19.04 |
Energy contribution | -19.48 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2752535 104 + 27905053 GAAACCCAUCCUACCCGCAACAAAAAACAA--AAAGGA---AACAACAGCAGCGGCCACAUCAUGGAGCCUAGGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG ..............................--...(..---..).......(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -23.50) >DroSec_CAF1 28133 109 + 1 GAACCCCAUCCUACCCGCAACAAUAAGGAAACAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG ................((........(....)...(....).......)).(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -27.50) >DroSim_CAF1 30752 109 + 1 GAACCCCAUCCUACCCGCAACAAUAAGGAAUCAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG ........((((.............))))......(....)..........(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -25.22) >DroEre_CAF1 29613 109 + 1 UAGCCCCAUGCUACCCGCAACAAUAAGGAAACAACAGCAACAACUACAGCAGCGGCCACUUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG ..((....(((.....))).......(....)....)).............(((((((...(((((((..........)))))))(((.....)))...)))))))... ( -27.10) >DroYak_CAF1 28233 106 + 1 UAACCCCAUCCUACCCACAACAAUAAGGAAACAACAGCAACAAC---AACAGCGAACAGAUCAUGGAGUCUACGUCCACUCCGAGGCUAAUUAAGUUAUUGGCUGCACG ........((((.............))))...............---....((..........((((((........)))))).(((((((......)))))))))... ( -17.52) >consensus GAACCCCAUCCUACCCGCAACAAUAAGGAAACAACGGCAACAACAACAGCAGCGGCCACAUCAUGGAGCCUACGUCCACUCCAUGGCUAAUUAAGUUAUUGGCUGCACG ...................................................(((((((...(((((((..........)))))))(((.....)))...)))))))... (-19.04 = -19.48 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006