Locus 81

Sequence ID 3R_DroMel_CAF1
Location 507,608 – 507,698
Length 90
Max. P 0.988640
window138

overview

Window 8

Location 507,608 – 507,698
Length 90
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 81.16
Mean single sequence MFE -30.73
Consensus MFE -25.88
Energy contribution -26.13
Covariance contribution 0.25
Combinations/Pair 1.07
Mean z-score -2.54
Structure conservation index 0.84
SVM decision value 2.13
SVM RNA-class probability 0.988640
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 507608 90 - 27905053
AGCGAUCGAGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUC-------------------------AACUCGAUCGUA
.(((((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..))).......-------------------------..))))))))). ( -29.60)
>DroSec_CAF1 36042 114 - 1
AGCGAUCGG-GACCAGAGAUGACAUCGUAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACACAUCGCAGUGCUGCAUACAACUCGAUCAUA
...((((((-(..(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..((((..(((....)))..))))..........)))))))... ( -31.80)
>DroSim_CAF1 36070 112 - 1
AGCGAUCGGGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACAUAUCGUAGUGCUGCAUACAACUCGAUC---
...(((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..((((..(((....)))..))))..........)))))))--- ( -30.80)
>consensus
AGCGAUCGGGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACA_AUCG_AGUGCUGCAUACAACUCGAUC_UA
...(((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..................(((....)))......)))))))... (-25.88 = -26.13 +   0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:33 2006