Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 507,608 – 507,698 |
Length | 90 |
Max. P | 0.988640 |
Location | 507,608 – 507,698 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.16 |
Mean single sequence MFE | -30.73 |
Consensus MFE | -25.88 |
Energy contribution | -26.13 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.07 |
Mean z-score | -2.54 |
Structure conservation index | 0.84 |
SVM decision value | 2.13 |
SVM RNA-class probability | 0.988640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 507608 90 - 27905053 AGCGAUCGAGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUC-------------------------AACUCGAUCGUA .(((((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..))).......-------------------------..))))))))). ( -29.60) >DroSec_CAF1 36042 114 - 1 AGCGAUCGG-GACCAGAGAUGACAUCGUAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACACAUCGCAGUGCUGCAUACAACUCGAUCAUA ...((((((-(..(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..((((..(((....)))..))))..........)))))))... ( -31.80) >DroSim_CAF1 36070 112 - 1 AGCGAUCGGGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACAUAUCGUAGUGCUGCAUACAACUCGAUC--- ...(((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..((((..(((....)))..))))..........)))))))--- ( -30.80) >consensus AGCGAUCGGGGACCAGAGAUGACAUCGAAUAAGGCAAUUAUUCAUUUAGCUGCCUGCCGAACUCAUUGCUGAACACUCAGAUACA_AUCG_AGUGCUGCAUACAACUCGAUC_UA ...(((((((...(((..((((..(((....(((((.(((......))).)))))..)))..))))..)))..................(((....)))......)))))))... (-25.88 = -26.13 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:33 2006