| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,746,847 – 21,746,943 |
| Length | 96 |
| Max. P | 0.988798 |
| Location | 21,746,847 – 21,746,943 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.51 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -14.85 |
| Energy contribution | -15.17 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.66 |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.988798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21746847 96 - 27905053 UAUGCAGCCCCUGAAACAAA---AAUCUGUUAAGACUCCCAAUUGCAUUGCACGUAUAUAGGAAUCAAAUG--AAUUGGGAACCCUUUUCGUGUUUUGCAA- ..(((((..(.(((((....---..(((....))).((((((((.((((..................))))--)))))))).....))))).)..))))).- ( -20.27) >DroSec_CAF1 13596 96 - 1 UAUGGAGCCCCUUAAACAAA---AAACUUUUAAGACACCCAAUUCCAUUGCACGUAUACAGGAAUCCAAAG--AAUUGGGAAUCCUUUUCGUGUUUUGCAA- ..(((.(...((((((....---.....))))))...))))....((..(((((.....((((.(((....--.....))).))))...)))))..))...- ( -18.10) >DroSim_CAF1 13784 96 - 1 UAUGCAACCCCUGAAACAAA---AAACUUUUAAGACACCCAAUUGCAUUGCACGUAUAAAGGAAUCCAAAG--AAUUGGGAAUCCUUUUCGUGUUUUGCAA- ....................---...................(((((..(((((...((((((.(((....--.....))).)))))).)))))..)))))- ( -23.30) >DroEre_CAF1 21940 96 - 1 UAUGCAGACCCUGCAACAAA---AAACUGUUAAGGCAUCCAAUUGCUUUGUACGUACAAAGGAAUCCAAAG--AAUUGCCAAUCCUUUUCGUACUUUGCAA- ..((((((......((((..---....))))((((((......))))))(((((...((((((...(((..--..)))....)))))).))))))))))).- ( -21.70) >DroYak_CAF1 13782 97 - 1 UAUGCAGACCCUAAAACAAAA--AAACUGUUACGACAUUCAAUUGCAUUGCACGCAUAAAGGAAUCCAAAG--AAUUGGCAAUCCUUUUCGUGUUUUGCAA- ...((((..............--...))))............(((((..(((((...((((((..((((..--..))))...)))))).)))))..)))))- ( -22.13) >DroPer_CAF1 17686 99 - 1 UGUCCAUAUUUAAGUUCAAAGCUCAUCUGCGAUGGCAGCCAGUUGUAUGGCAAGA--GACGGAAUCAGAAAACGAUUCG-UAUCCUUCUCUUGACAUACAAC ....................((.((((...)))))).....((((((((.(((((--((.(((....(((.....))).-..))).))))))).)))))))) ( -28.70) >consensus UAUGCAGACCCUGAAACAAA___AAACUGUUAAGACACCCAAUUGCAUUGCACGUAUAAAGGAAUCCAAAG__AAUUGGGAAUCCUUUUCGUGUUUUGCAA_ ..........................................(((((..(((((...((((((..((((......))))...)))))).)))))..))))). (-14.85 = -15.17 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:35 2006