Locus 8098

Sequence ID 3R_DroMel_CAF1
Location 21,744,558 – 21,744,654
Length 96
Max. P 0.692976
window13036

overview

Window 6

Location 21,744,558 – 21,744,654
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.11
Mean single sequence MFE -27.32
Consensus MFE -15.21
Energy contribution -15.91
Covariance contribution 0.70
Combinations/Pair 1.23
Mean z-score -2.26
Structure conservation index 0.56
SVM decision value 0.33
SVM RNA-class probability 0.692976
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21744558 96 + 27905053
GAAAUUCUGGUAUGGAAAAUACGAAAGUGUGGCCAGUGAAGAGAAAAACAAUUUUAAUCUUCACGAGUCGGAAACUCAGCUCAAAUUGGAGCAGCC
((..((((((..(((...((((....))))..)))(((((((..(((.....)))..)))))))...))))))..)).((((......)))).... ( -29.70)
>DroSec_CAF1 11289 96 + 1
GAAAUUCUGGUAUGGAAAGUACGAAAGUGUGGCCAGUGAAGAGAAAAACAAUUUCAAUCUUCACGAGUCGGAAACUCAGCUCAAAUUGGAGUAGCC
...((((..((.(((..(.(((....))))..)))(((((((((((.....))))..)))))))((((.(....)...))))..))..)))).... ( -27.00)
>DroSim_CAF1 11476 96 + 1
GAAAUUCUGGUAUGGCAAAUACGAAAGUGUGGCCAGUGAAGAGAAAAACAAUUUUAAUCUUCACGAGUCGGAAACUCAGCUCAAAUUGGAGCAGCC
((..((((((..((((..((((....)))).))))(((((((..(((.....)))..)))))))...))))))..)).((((......)))).... ( -31.40)
>DroYak_CAF1 11451 96 + 1
GAAAUUCUGGUAUGGAAAAUACGAUAGUGUGGCCAGUGAGGAGAAAAACAAUUUUAAUCUUCACGAGUCGGAAACUCAGCUCAAAUUGGAGCAGUC
((..((((((..(((...((((....))))..)))(((((((..(((.....)))..)))))))...))))))..)).((((......)))).... ( -26.40)
>DroAna_CAF1 13038 96 + 1
UAACUAUUGGUACGGGGAGUACGAGACUGUGUCCUGUGAGGAGAAAACAGACUUGGCCCUUCACGAGUCAGUGACGCAGCUGAAAUUGGAUCAGCC
..((((((.((..((((....((((.((((.(((.....)))....)))).)))).))))..)).))).)))......(((((.......))))). ( -26.30)
>DroPer_CAF1 11155 96 + 1
CAAAUUCUGGUACGGCGAAUACGAGAGUGUGGCCUGUGAUGAUAAAACGGAGCUGGCACUCCAUGAAUCUGUGACUCAACCAAAACUGGAGCUGGC
.....((((.((((((..((((....)))).))).))).........))))((..((....(((......)))......(((....))).))..)) ( -23.10)
>consensus
GAAAUUCUGGUAUGGAAAAUACGAAAGUGUGGCCAGUGAAGAGAAAAACAAUUUUAAUCUUCACGAGUCGGAAACUCAGCUCAAAUUGGAGCAGCC
....(((..((..((...((((....))))..)).(((((((...............)))))))((((.....)))).......))..)))..... (-15.21 = -15.91 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:34 2006