Locus 8097

Sequence ID 3R_DroMel_CAF1
Location 21,744,373 – 21,744,478
Length 105
Max. P 0.735161
window13035

overview

Window 5

Location 21,744,373 – 21,744,478
Length 105
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 82.55
Mean single sequence MFE -27.24
Consensus MFE -19.58
Energy contribution -19.75
Covariance contribution 0.17
Combinations/Pair 1.30
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.43
SVM RNA-class probability 0.735161
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21744373 105 + 27905053
AAGUAU----UUC-UUUCUA-UACAGAACCCCAACUGAAUCUACCAGUCAUGGCAUUCAUGAGAUCUCAUUUUUGUGGUACACCGCAGUUGGUUCUGUGGGUACUGUACUU
((((((----...-...((.-(((((((((..(((((....(((((.(((((.....)))))(....).......))))).....))))))))))))))))....)))))) ( -28.10)
>DroPse_CAF1 10990 110 + 1
AUGUUUUUCUUUU-UUUCCAUCACAGAACCCCAGCUGAAGACAAGAGCUUUAGUAUCCAUGAGAUCUCGUUUUUGUGGUACACUACAGUUGGAUCUGUGGGCACCUUAGUC
.............-......(((((((...((((((((((.(....))))..(((.(((..(((......)))..))))))....))))))).)))))))........... ( -27.10)
>DroSec_CAF1 11103 106 + 1
AAGUAU----UUUUUUUCUA-UACAGAACCCCAAGUGAAUCUACCAGUCAUGGCAUUCAUGAAAUCUCAUUUUUGUGGUACACCGCAGUUGGUUCUGUGGGUACUGUACUG
.(((((----.......((.-(((((((((....((((((...(((....))).))))))............((((((....))))))..)))))))))))....))))). ( -27.70)
>DroSim_CAF1 11297 99 + 1
AAGUAU----UUU-UUUCUA-UACAGAACCCCC------UCUACCAGUCAUGGCAUUCAUGAGAUCUCAUUUUUGUGGUACACCGCAGUUGGAUCUGUGGGUACUGUACUU
......----...-......-(((((.((((..------........(((((.....)))))((((.((...((((((....)))))).))))))...)))).)))))... ( -28.10)
>DroEre_CAF1 19438 105 + 1
AACCAU----UUC-UUUUUA-UACAGAACCCCAACGGAAUCUAAAAGUCAUGGCAUUCAUGAAAUCUCAUUUUGGUGGUACACCGCAAUUGGUUCUGUGGGUACAGUACUU
......----...-......-(((((((((....((((((.......(((((.....)))))......))))))((((....))))....)))))))))............ ( -24.92)
>DroYak_CAF1 11266 105 + 1
AAGUGU----UUC-CUUUUA-UGCAGAACCCCAACCGAAUCUACCAGUCAUGGCAUUCAUGAGAUCUCAUUUUUGUGGUACACCGCAGUUGGUUCUGUGGGCACUGUACUU
.(((((----((.-......-.((((((((......((((...(((....))).))))((((....))))..((((((....))))))..)))))))))))))))...... ( -27.50)
>consensus
AAGUAU____UUC_UUUCUA_UACAGAACCCCAACUGAAUCUACCAGUCAUGGCAUUCAUGAGAUCUCAUUUUUGUGGUACACCGCAGUUGGUUCUGUGGGUACUGUACUU
.....................(((((((((.................(((((.....)))))..........((((((....))))))..)))))))))............ (-19.58 = -19.75 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:33 2006