Locus 8092

Sequence ID 3R_DroMel_CAF1
Location 21,731,828 – 21,731,923
Length 95
Max. P 0.774688
window13024

overview

Window 4

Location 21,731,828 – 21,731,923
Length 95
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.69
Mean single sequence MFE -25.12
Consensus MFE -14.80
Energy contribution -15.83
Covariance contribution 1.03
Combinations/Pair 1.21
Mean z-score -1.98
Structure conservation index 0.59
SVM decision value 0.54
SVM RNA-class probability 0.774688
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21731828 95 + 27905053
UGCAAGUGCAAUCGAGUAAUUGGCGCACAAUUCCAGCGAUGAUAUCAUUGCCAUUGUGCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUGGCGU---------
....((((((......((((.((((((((((....((((((....)))))).)))))))))).))))...))))))....(((......)))...--------- ( -32.70)
>DroPse_CAF1 15382 100 + 1
U-UAAGUUAACCCA---AAUUGCUGCACAAUUCAGAGGCAGAUAGCUUUGCCAUUGUCCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUAGAGCUGGAGCAGC
.-............---..((((((((((.....(.(((.(((((........))))).)))).....)))))).....((((............)))))))). ( -20.00)
>DroSec_CAF1 12932 95 + 1
UGCAAGUGCAGUCGAGUAAUUGGCGCACAAUUCCAGCGAUGAUAUCAUAGCCAUUGUGCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUUGCGU---------
.(((((((((......((((.((((((((((....((.(((....))).)).)))))))))).))))...)))))..............))))..--------- ( -27.73)
>DroSim_CAF1 12906 95 + 1
UGCAAGUGCAGUCGAGUAAUUGGCGCACAAUUCCAGCGAUGAUAUCAUAGCCAUUGUGCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUGGCGU---------
....((((((......((((.((((((((((....((.(((....))).)).)))))))))).))))...))))))....(((......)))...--------- ( -27.80)
>DroYak_CAF1 12791 95 + 1
UGCAAGUGCAGUCAAGUAAUUGGCGCACAAUUCCCGGUAUGAUAUCAUAGCCAUUGUGCGUCCAUUAAUGUGCAUUAAACCCAAUAAAAUAGCGU---------
....((((((......((((.((((((((((....((((((....))).))))))))))))).))))...))))))...................--------- ( -24.90)
>DroPer_CAF1 15689 100 + 1
U-UAAGUUAACCCA---AAUUGCUGCACAAUUCAGAGGCAGAUAGCUGUGCCAUUGUCCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUAGAGCUGGAACAGC
.-............---....((((((((.....(.(((.(((((........))))).)))).....)))))......((((............))))..))) ( -17.60)
>consensus
UGCAAGUGCAGUCAAGUAAUUGGCGCACAAUUCCAGCGAUGAUAUCAUAGCCAUUGUGCGCCCAUUAAUGUGCAUUAAAUCCAAUAAAAUAGCGU_________
....((((((......((((.((((((((((......((((....))))...)))))))))).))))...))))))............................ (-14.80 = -15.83 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:23 2006