Locus 8091

Sequence ID 3R_DroMel_CAF1
Location 21,731,698 – 21,731,795
Length 97
Max. P 0.832603
window13023

overview

Window 3

Location 21,731,698 – 21,731,795
Length 97
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.05
Mean single sequence MFE -28.05
Consensus MFE -17.18
Energy contribution -19.81
Covariance contribution 2.63
Combinations/Pair 1.07
Mean z-score -2.88
Structure conservation index 0.61
SVM decision value 0.72
SVM RNA-class probability 0.832603
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21731698 97 + 27905053
AUUCGACCCUGCAGCAGACGUAAGUAAUUGCUGCAAAUGAUUGUCAAAAAUCAAUUAGUUGGUGUGCUGGCUAUAUAUAUA---------------UUAUAGUACAAUACCU
....(((..(((((((.((....))...)))))))..(((((......)))))....)))(((((....((((((......---------------.))))))...))))). ( -27.60)
>DroSec_CAF1 12796 103 + 1
AUUCGACCCUGCAGCAGACGUAAGUAAUUGCUGUAAUUGAUUGUCAAAAAUCAAUUAUUUGGUGUGCUGGCUAGUUAUGCUCAAGCU---------AUAUAGUACAAUACCU
.....(((..((((((.((....))...))))))((((((((......))))))))....)))((((((..(((((.......))))---------)..))))))....... ( -27.90)
>DroSim_CAF1 12770 103 + 1
AUUCGACCCUGCAGCAGACGUAAGUAAUUGCUGUAAUUGAUUGUCAAAAAUCAAUUAGUUGGUGUGCUGGCUAGUUAUGCUCUAGCU---------AUAUAGUACAAUACCU
..(((((...((((((.((....))...))))))((((((((......)))))))).)))))((((((((((((.......))))))---------....))))))...... ( -31.70)
>DroYak_CAF1 12646 112 + 1
AUUCGACCCUGCAGCAGACGUAAGUAAUUGCAGUAAUUGAUUGUCAAAAAUCAAUUAGUUGUUGUGCUGGCUAGUUAUGCUGUACCUACUACAUAUAUAUAAUAUAAUACCU
.........((((((((((...((((...(((((((((((((......))))))))).))))..)))).....))).)))))))............................ ( -25.00)
>consensus
AUUCGACCCUGCAGCAGACGUAAGUAAUUGCUGUAAUUGAUUGUCAAAAAUCAAUUAGUUGGUGUGCUGGCUAGUUAUGCUCUAGCU_________AUAUAGUACAAUACCU
...((((...((((((.((....))...))))))((((((((......)))))))).)))).(((((((..............................)))))))...... (-17.18 = -19.81 +   2.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:22 2006