Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,720,165 – 21,720,285 |
Length | 120 |
Max. P | 0.575503 |
Location | 21,720,165 – 21,720,285 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -44.44 |
Consensus MFE | -29.54 |
Energy contribution | -29.27 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.51 |
Mean z-score | -1.41 |
Structure conservation index | 0.66 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21720165 120 - 27905053 UAGCCCUUUGCUGCUGCCACGAGGGCAUCUCUGGUGGCGGAGGAGCAUGCUCAUUGGCCCUGCCUCCGCGAUCGGGUACCCGACCAAUCACAUGCUUUUGGAUUUUGGAAGCCGUAUUCU ..((((((.((....))...)))))).......((((((((((.....(((....)))....)))))))(.((((....)))).)...)))..(((((..(...)..)))))........ ( -42.70) >DroVir_CAF1 866 120 - 1 CGGCACGCUGCUGUUGCCAGGAAGGCAUCUCUGGCGGCGGUGGCGCGUGCUCAUUGGCGCGUCCACCGCGAUCCGGCACAUUGCCAAUCACAUGUUUUUCUAUCUUCGAAGCCGUAUUCU ((((.(((((..(.((((.....)))).)..)))))(((((((.(((((((....))))))))))))))(((..(((.....))).))).....................))))...... ( -49.50) >DroPse_CAF1 872 120 - 1 UUGCCCUUUGCUGUUGCCAAGAGGGCAUCUCUGGUGGGGGCGGAGCAUGCUCAUUGGCUCGUCCGCCGCGAUCCGGGACACUGCCAAUCAUAUGCUUUUGGAUCUUCGAGGCAGUAUUCU .((((((((((....))..))))))))((((.(((.(.((((((.(..(((....)))..))))))).).))).)))).((((((......((.(....).))......))))))..... ( -45.40) >DroWil_CAF1 716 120 - 1 UGGCUCGUUGCUGCUGCCAUGAUGGCAUCUCAGGCGGAGGGGGAGCAUGCUCAUUGGCUCUGCCACCACGAUCAGGCACUCUGCCAAUCACAUGUUUCUGUAUCUUUGAUGUCGUGUUCU ((((..((....)).))))..((((((((..(((....(.(((((((((...((((((..((((..........))))....))))))..))))))))).).)))..))))))))..... ( -37.90) >DroMoj_CAF1 866 120 - 1 CGGCACGUUGCUGUUGCCAGGAUGGCAUCUCUGGCGGUGGUGGAGCAUGCUCAUUGGCACGUCCACCACGAUCAGGCACACUUCCAAUCACAUGCUUCUCUAUCUUAGAUGCCGUAUUCU .((((((....)).))))...(((((((((((((..((((((((.(.((((....)))).)))))))))..))))(((..............)))...........)))))))))..... ( -40.74) >DroAna_CAF1 872 120 - 1 UGGCUCGCUGCUGUUGCCAUGAGGGCAUUUCCGGUGGCGGAGGAGCGUGCUCAUUAGCACGACCUCCUCGAUCUGGUACGCUGCCAAUCACAUGCUUCUGUAUCUUGGAGGCGGUGUUUU ((((.(((..(((.((((.....))))....)))..)))((((((((((((....))))))..)))))).............))))..(((.((((((((.....))))))))))).... ( -50.40) >consensus UGGCACGUUGCUGUUGCCAGGAGGGCAUCUCUGGCGGCGGAGGAGCAUGCUCAUUGGCACGUCCACCGCGAUCAGGCACACUGCCAAUCACAUGCUUCUGUAUCUUCGAAGCCGUAUUCU (((((((((((((.((((.....))))....))))))))).((((((((...(((((((..(((..........)))....)))))))..))))))))............))))...... (-29.54 = -29.27 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:19 2006