Locus 8088

Sequence ID 3R_DroMel_CAF1
Location 21,716,087 – 21,716,207
Length 120
Max. P 0.528673
window13019

overview

Window 9

Location 21,716,087 – 21,716,207
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.48
Mean single sequence MFE -25.17
Consensus MFE -20.60
Energy contribution -20.97
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.41
Structure conservation index 0.82
SVM decision value -0.01
SVM RNA-class probability 0.528673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21716087 120 - 27905053
AUGGACAGAAUGCAAAGAAUGCUAAAGUGAAUGCUUUUAUCUGCAUACUUUUAGUUCGUGAUUCGUGACCUUCUUAAUGGGUAUUAUCGGACAGAAAACAACAAUCAUGUCUAAAAAAAA
.(((((.((((..((((.((((.(((((....))))).....)))).))))..))))((((((.((....((((...(((......)))...))))....)))))))))))))....... ( -24.70)
>DroSec_CAF1 4843 118 - 1
AUGAACAGAAUGCAAAGAAUGCUAAAGUGAAUGCUUUUAUCUGCAUACUUUUAGUUCGUGAUUCGUGACCUUCUUAAUGGUUAUUAUCGGUCAAAAAACAGCAAACAUGUCUUAU--AAA
(((((((...(((...((((...(((((..((((........)))))))))..)))).((((..((((((........)))))).))))...........)))....))).))))--... ( -22.60)
>DroSim_CAF1 4846 118 - 1
AUGAACAGAAUGCAAAGAAUGCUAAAGUGAAUGCUUUUAUCUGCAUACUUUUAGUUCGUGAUUCGUGACCUUCUUAAUGGUUAUUAUCGGACAAAAAACAGCAAACAUGUCUUAU--AAA
(((((((...(((((((.((((.(((((....))))).....)))).))))..(((((......((((((........))))))...)))))........)))....))).))))--... ( -23.30)
>DroYak_CAF1 4884 112 - 1
AUGGACAGAAUGCAAAGAAUGCUAAAGUGAAUGCUUUUAUCUGCAUACUUUUCGUUCGUGAUUCGUGACCUUCUUAAUGGUUACAGUCGGCCAACAA------AACAUGUCUUAU--GAA
..((((((((((.((((.((((.(((((....))))).....)))).)))).))))).(((((.((((((........)))))))))))........------....)))))...--... ( -30.10)
>consensus
AUGAACAGAAUGCAAAGAAUGCUAAAGUGAAUGCUUUUAUCUGCAUACUUUUAGUUCGUGAUUCGUGACCUUCUUAAUGGUUAUUAUCGGACAAAAAACAGCAAACAUGUCUUAU__AAA
..(((((((((..((((.((((.(((((....))))).....)))).))))..)))).((((..((((((........)))))).))))..................)))))........ (-20.60 = -20.97 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:18 2006