Locus 8087

Sequence ID 3R_DroMel_CAF1
Location 21,712,012 – 21,712,106
Length 94
Max. P 0.516082
window13018

overview

Window 8

Location 21,712,012 – 21,712,106
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.27
Mean single sequence MFE -32.65
Consensus MFE -19.61
Energy contribution -19.58
Covariance contribution -0.03
Combinations/Pair 1.21
Mean z-score -1.70
Structure conservation index 0.60
SVM decision value -0.03
SVM RNA-class probability 0.516082
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21712012 94 - 27905053
GCUUUCCAUCUGUGCAUGGCCUGAUGAUGUACUGGCACAUGGGCAGCAGCAGAAAGGCCAGCGCCACGGUGGCUAUAACUGUGGAGA-GAGAUUU
.((((((..((((.(((((((............))).)))).))))..((((...(((((.((...)).)))))....)))))))))-)...... ( -35.50)
>DroVir_CAF1 9341 92 - 1
GUUUACCAUCCGUGCAGGGACGUAUUAUAUACUGGCACAUGGGCAGGAGCAGAAAUGCCAGCGCCACAGUGGCAAUAACUGUGAAUA-UACGU--
........(((.....)))((((((......((((((.....((....)).....))))))...((((((.......))))))...)-)))))-- ( -25.00)
>DroPse_CAF1 642 95 - 1
GCUUUCCGUCCGUGCAGGGCCGCAUGAUGUACUGGCACAUGGGCAGCAGCAGAAAGGCCAGUGCCACGGUGGCAAUGACUGCAAGGAACAAACGA
........(((.(((((.(((((.....((((((((......((....))......))))))))....))))).....))))).)))........ ( -37.20)
>DroMoj_CAF1 754 92 - 1
GCUUGCCAUCCGUGCAGGGCCGUAUAAUGUAUUGGCACAUGGGCAACAGCAGGAAGGCCAGCGCCACAGUGGCAAUAACUGUGAAUA-AAUAG--
(((.(((.(((.(((...((((..........)))).....(....).)))))).))).)))..((((((.......))))))....-.....-- ( -31.50)
>DroAna_CAF1 7422 95 - 1
GCUUCCCGUCCGUACACGGCCGGAUGAUGUACUGGCACAUGGGCAGCAGCAGGAAGGCCAAUGCCACAGUGGCAAUAACUGUGAAGGACAUACUU
.......((((...(((((((......(((.(((.(.....).)))..)))....))))..((((.....))))......)))..))))...... ( -29.50)
>DroPer_CAF1 5064 95 - 1
GCUUUCCGUCCGUGCAGGGCCGCAUGAUGUACUGGCACAUGGGCAGCAGCAAAAAGGCCAGUGCCACGGUGGCAAUGACUGCAAGGAACAAACGA
........(((.(((((.(((((.....((((((((......((....))......))))))))....))))).....))))).)))........ ( -37.20)
>consensus
GCUUUCCAUCCGUGCAGGGCCGCAUGAUGUACUGGCACAUGGGCAGCAGCAGAAAGGCCAGCGCCACAGUGGCAAUAACUGUGAAGA_CAAAC__
............(((((((((......(((.(((.(.....).)))..)))....))))...(((.....))).....)))))............ (-19.61 = -19.58 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:17 2006