Locus 8086

Sequence ID 3R_DroMel_CAF1
Location 21,710,952 – 21,711,057
Length 105
Max. P 0.636894
window13017

overview

Window 7

Location 21,710,952 – 21,711,057
Length 105
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 88.69
Mean single sequence MFE -26.41
Consensus MFE -20.44
Energy contribution -20.16
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.59
Structure conservation index 0.77
SVM decision value 0.21
SVM RNA-class probability 0.636894
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21710952 105 + 27905053
GG---AGUGAGUGUGUGCUCCGAAUAGCCUAAUCGCAGUUGUCCAAAUAACCUGAAGAAGGUAAAAAAGUAUACG-G-GGUUACGUGCGAUAAGGUCGGCAAACAAAAUA--
((---(((........))))).....((((.((((((((..(((.....((((.....))))......(....).-)-))..)).)))))).))))..............-- ( -27.80)
>DroSec_CAF1 38391 101 + 1
GG---AG----UGUGUGCUCCGAAUAGCCUAAUCGCAGCUGUCCAAAUAACCUGAAGAAGGUAAAAAAGAUUACG-G-GGUUACUUGCGAUAAGGUCGGCAAACAAAAUA--
((---((----(....))))).....((......)).((((.((.....((((.....)))).......((..((-(-(....))))..))..)).))))..........-- ( -25.30)
>DroSim_CAF1 50155 102 + 1
GG---AG----UGUGUGCUCCGAAUAGCCUAAUCGCAGCUGUCCAAAUAACCUGAAGAAGGUAAAAAAGAUUACG-GGGGUUACUUGCGAUAAGGUCGGCAAACAAAAUA--
((---((----(....))))).....((......)).((((.((.....((((.....)))).......((..((-((.....))))..))..)).))))..........-- ( -25.30)
>DroEre_CAF1 34994 105 + 1
GGAGGAG----UGUGUGCGUUGAAACGCCUAAUCGCAGCUGUCCAAAUAACCUGAAGAAGGUAAAAGAUAU-ACGGGGGGUUAAUUGCGAUAAGGUCGGCAAACAAAAUA--
.......----(((.(((((....))((((.(((((((((.(((.....((((.....))))....(....-.)))).)))....)))))).))))..))).))).....-- ( -26.00)
>DroYak_CAF1 35191 104 + 1
GG---AG----UGUGUGCUCCGAAAAGCCUAAUCGCAGCUGUCUAAAUAACCUGUAGAAGGUAUAAGAUAU-ACGGGGGGUUACUUGCGAUAAGGUCGGCAAACAAAAUACU
((---((----(....))))).....((((.(((((((..((...(((..((((((..............)-)))))..)))))))))))).))))................ ( -27.64)
>consensus
GG___AG____UGUGUGCUCCGAAUAGCCUAAUCGCAGCUGUCCAAAUAACCUGAAGAAGGUAAAAAAGAUUACG_GGGGUUACUUGCGAUAAGGUCGGCAAACAAAAUA__
.............(((...(((....((((.(((((((.((.((.....((((.....))))................)).)).))))))).)))))))...)))....... (-20.44 = -20.16 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:16 2006