Locus 8085

Sequence ID 3R_DroMel_CAF1
Location 21,709,643 – 21,709,745
Length 102
Max. P 0.615309
window13016

overview

Window 6

Location 21,709,643 – 21,709,745
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 99.02
Mean single sequence MFE -16.98
Consensus MFE -16.20
Energy contribution -16.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.95
SVM decision value 0.17
SVM RNA-class probability 0.615309
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21709643 102 + 27905053
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAGCAACAAAAGCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....))(((.......)))............))))))..))))................ ( -17.50)
>DroSec_CAF1 37036 102 + 1
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAGCAACAAAAGCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....))(((.......)))............))))))..))))................ ( -17.50)
>DroSim_CAF1 48785 102 + 1
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAGCAACAAAAGCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....))(((.......)))............))))))..))))................ ( -17.50)
>DroEre_CAF1 33626 102 + 1
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAACAACAAAACCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....)).........................))))))..))))................ ( -16.20)
>DroYak_CAF1 33869 102 + 1
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAACAACAAAAGCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....)).........................))))))..))))................ ( -16.20)
>consensus
UUUGCCAACAGUCAACAUAAAUUAGUGCGAGCAACGGCACUUGGCAACAUGCAACAAUAGCAACAAAAGCGACAUGAUUGAAGCAACAACAACACCGACCAA
.((((...((((((.........(((((........)))))((....)).........................))))))..))))................ (-16.20 = -16.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:15 2006