| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,706,812 – 21,706,902 |
| Length | 90 |
| Max. P | 0.520030 |
| Location | 21,706,812 – 21,706,902 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -11.89 |
| Energy contribution | -12.25 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21706812 90 - 27905053 ---GGGUUCCUUGGAAAAAGA-G------CAUCUCCAAGUGGUUG------AAAAACCAGUUAAAUUGCAGCUACUUUUUA---AGGAGUUACCUAUUUAAGAAUAUCA ---((((((((((((((...(-(------(.........(((((.------...)))))((......)).)))..))))))---))))...)))).............. ( -23.20) >DroSec_CAF1 34422 90 - 1 ---GGGUUCCUUGGAAAAAGA-G------CAUAUCCAAGUGGUUG------ACAAACCAGUUAAAUAGCAGCCACUUUUUA---AGGAGUUACCUAUUUGAGAAUAUCA ---((((((((((((((..(.-(------(.(((..((.(((((.------...))))).))..)))...)))..))))))---))))...)))).............. ( -21.30) >DroSim_CAF1 45891 90 - 1 ---GGGUUCCUUGGAAAAAGA-G------CAUCUCCAAGUGGUUG------ACAAACCAGUUAAAUCGCAGCCACUUUUUA---AGGAGUUACCUAUUUGAGAAUAUCA ---((((((((((((((..((-(------...)))...(((((((------.(..............))))))))))))))---))))...)))).............. ( -20.94) >DroEre_CAF1 30946 90 - 1 ---GGGUUCCUUUGAAAAAGA-G------CAUCUCCAAGUGGUUG------ACAAACCAGUUAAAUCACAGCCACUUUUUA---AGGAGUUACCCAUUUGAGAAUAUUA ---((((.((((((((((.((-(------...)))...(((((((------.................)))))))))))))---))).)..)))).............. ( -20.43) >DroYak_CAF1 31171 90 - 1 ---GGGUUCCUUUGAAAAAGA-G------CAUCUCCAAGUGGUUG------ACAAACCAGUUAAAUCACAGCCACUUUUUA---AGGAGUUACCCAUUUGAGAAUAUCA ---((((.((((((((((.((-(------...)))...(((((((------.................)))))))))))))---))).)..)))).............. ( -20.43) >DroPer_CAF1 98934 101 - 1 AUCGUGUUCGUAGCAGAAGGAAGCCAACGCAACGAACGGUGGUUGGGUGAUAGAAACCAGUUAAACCU-AACGAAAUUCAAGCGAGGAAAGAGCUAU-------AACUA .((((((((((.((.(..((...))..))).))))))(((.....(((.......)))......))).-.))))......(((.........)))..-------..... ( -21.50) >consensus ___GGGUUCCUUGGAAAAAGA_G______CAUCUCCAAGUGGUUG______ACAAACCAGUUAAAUCGCAGCCACUUUUUA___AGGAGUUACCUAUUUGAGAAUAUCA ...((((((((...((((((...................(((((..........)))))(((.......)))..))))))....))))...)))).............. (-11.89 = -12.25 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:11 2006