| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,704,291 – 21,704,389 |
| Length | 98 |
| Max. P | 0.984683 |
| Location | 21,704,291 – 21,704,389 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.52 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -20.90 |
| Energy contribution | -20.94 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.96 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21704291 98 + 27905053 AGAGCAUUUUACUGCUGCUAAAUUGCAAAAAAAAA------AAUAAAAUGGGGCCAAAAGGCAGCUGGGCUUGCAUUGCAUGUCCAG------------UCACAGUUUUGUCCCAC ..((((......))))((......)).........------.......((((((.(((..(..(((((((.(((...))).))))))------------)..)..))).)))))). ( -30.00) >DroSec_CAF1 31929 99 + 1 AGAGCAUUUUACUGCUGCUAAAUUGCAAAAAAAAA----AUAGU-AAAUGGGGCCAAAAGGCAGCUGGGCUUGCAUUGCAUGUCCAG------------UCACAGUUUUGUCCCAC ..((((......))))((......)).........----.....-...((((((.(((..(..(((((((.(((...))).))))))------------)..)..))).)))))). ( -30.00) >DroSim_CAF1 43358 97 + 1 AGAGCAUUUUACUGCUGCUAAAUUGCAAAAAAAAA------AGU-AAAUGGGGCCAAAAGGCAGCUGGGCUUGCAUUGCAUGUCCAG------------UCACAGUUUUGUCCCAC ..((((......))))((......)).........------...-...((((((.(((..(..(((((((.(((...))).))))))------------)..)..))).)))))). ( -30.00) >DroEre_CAF1 28352 114 + 1 AGAGCAUUUUACUGCUGAUAGACUGCAAUACAAAAAAUUUUUAA-AAAUG-GGGCAAAAGGCAGCUGGGCUUGUAUUGCAUGUCCAGUCACAGCCACAGUCACAGUUUUGUCCCAC ...(((.(((((....).)))).)))..................-...((-((((((((.(..((((((((.((((((......)))).)))))).))))..)..)))))))))). ( -30.90) >DroYak_CAF1 28725 109 + 1 AGAGCAUUUUACUGCUUCCAAACUGCAAAAAAACAAAAAAAAAA-AAAUGGGGGCAAAAGCCAGCUGGGCUUGCAUUGCAUGUCCAGUUAC------AGUCACAGUUUUGCCCCAC .(((((......)))))...........................-.....(((((((((((.((((((((.(((...))).))))))))..------.)).....))))))))).. ( -30.90) >consensus AGAGCAUUUUACUGCUGCUAAAUUGCAAAAAAAAA______AAU_AAAUGGGGCCAAAAGGCAGCUGGGCUUGCAUUGCAUGUCCAG____________UCACAGUUUUGUCCCAC ...(((.((((.......)))).)))......................(((((((....)))..((((((.(((...))).))))))........................)))). (-20.90 = -20.94 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:10 2006