| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,703,928 – 21,704,046 |
| Length | 118 |
| Max. P | 0.559108 |
| Location | 21,703,928 – 21,704,046 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.12 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -13.35 |
| Energy contribution | -15.98 |
| Covariance contribution | 2.62 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559108 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21703928 118 + 27905053 UUAAAAAAAAAAAUGUUUCUGAAGAAGAGGUUUAUUCCUAGAGCUCUUAUAAAGUAUGUGUAUGUAUAUACUACUUUGGAUAAACCUCAAUUCCCUUAUCCUUUUAGGGAACAAAAGU ..........................(((((((((((..((....))...((((((.(((((....))))))))))))))))))))))..((((((.........))))))....... ( -26.90) >DroSec_CAF1 31569 115 + 1 UUUGAA---AAAUUGUAUUUGAAGAAGAGGUUUAUUUCUAGAGCUCUUAUAAAGUAUGUGUAUGUAUAUGCUACUUUGGAUAAACCCCAAUUCCCUUAUCCUUUUAGGGAACAAAAGU ((((..---......((((..((((((((.((((....)))).)))))....((((((((....)))))))).)))..))))........((((((.........))))))))))... ( -27.40) >DroSim_CAF1 42998 115 + 1 UUUGAA---AAAUUGUAUUUGAAGAAGAGGUUUAUUUCUAGAGCUCUUAUAAAGUAUGUGUAUGUAUAUACUACUUUGGAUAAACCCUAAUUCCCUUAUCCUUAUAGGGAACAAAAGU ((((..---......((((..((((((((.((((....)))).)))))....((((((((....)))))))).)))..))))........((((((.........))))))))))... ( -27.40) >DroYak_CAF1 28383 100 + 1 UUUUAA---ACAUUUUAUUUAAAGAAAAGGGUUAUUCUC----UUCUUAUAUACUAAG----------CACUACGUUGGAUAAACCCCAAUUCCCU-AUCCUUUUAGAGCACAAAAGU ......---............((((..((((.....)))----))))).........(----------(.(((....(((((.............)-))))...))).))........ ( -11.12) >consensus UUUGAA___AAAUUGUAUUUGAAGAAGAGGUUUAUUCCUAGAGCUCUUAUAAAGUAUGUGUAUGUAUAUACUACUUUGGAUAAACCCCAAUUCCCUUAUCCUUUUAGGGAACAAAAGU ...............((((((((((((((.((((....)))).)))))....((((((((....)))))))).)))))))))........((((((.........))))))....... (-13.35 = -15.98 + 2.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:09 2006