Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 21,696,966 – 21,697,061 |
Length | 95 |
Max. P | 0.999883 |
Location | 21,696,966 – 21,697,061 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -24.45 |
Consensus MFE | -21.52 |
Energy contribution | -21.56 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -3.19 |
Structure conservation index | 0.88 |
SVM decision value | 4.37 |
SVM RNA-class probability | 0.999883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21696966 95 + 27905053 ACACGUAGGGGCUUUAUAAAGAUUCAACCAUAAUUUAAUUUAGGUUGAAUCGGAGCUUCAGCAAGCCUACAACUUGGUUAAGCAUAAAAAUAUUU .......((((((((.....(((((((((.(((......)))))))))))))))))))).((.((((........))))..))............ ( -25.20) >DroSec_CAF1 19959 95 + 1 ACUCGUAGGCGCUCUAUAAUGAUUAAACCAUAAUUUAAUUUAGGUUGAAUCGGAGCUUCAGCAAGCCUACAACUUGGUUAAGCAUAAAAAUAUUU ....(((((((((((.....((((.((((.(((......))))))).)))))))))........))))))......................... ( -20.40) >DroSim_CAF1 35705 95 + 1 ACACGUAGGCGCUUUAUAAUGAUUCAACCAUAAUUUAAUUUAGGUUGAAUCGGAGCUUCAACAAGCCUACAACUUGGUUAAGCAUAAAAAUAUUU ....((((((((((.....((((((((((.(((......)))))))))))))))))........))))))......................... ( -24.30) >DroEre_CAF1 20883 94 + 1 ACACGUAGGAGCUUUAUCAAGAUUCAACCAUAAUAUAAUUUAGGUUGAAUCAGAGCUUCAGCAAGCCUACGACUUUGUUAAGCAUAAAAAUAUU- ...((((((.(((...((..(((((((((.(((......)))))))))))).)).....)))...)))))).......................- ( -24.70) >DroYak_CAF1 21157 95 + 1 ACACGUAGGGGCUUUAUAAAGAUUCAACCAUAAUUUAAUUUAGGUUGAAUCGGAGCUUCAGCAGGCCUACGACUUUGUUAAGCAUAAAGAUAUUU ...((((((.(((.......(((((((((.(((......))))))))))))........)))...)))))).((((((.....))))))...... ( -27.66) >consensus ACACGUAGGCGCUUUAUAAAGAUUCAACCAUAAUUUAAUUUAGGUUGAAUCGGAGCUUCAGCAAGCCUACAACUUGGUUAAGCAUAAAAAUAUUU ....((.((((((((.....(((((((((.(((......)))))))))))))))))))).))..((..((......))...))............ (-21.52 = -21.56 + 0.04)
Location | 21,696,966 – 21,697,061 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 93.05 |
Mean single sequence MFE | -22.37 |
Consensus MFE | -20.62 |
Energy contribution | -20.42 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.41 |
Structure conservation index | 0.92 |
SVM decision value | 4.04 |
SVM RNA-class probability | 0.999770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21696966 95 - 27905053 AAAUAUUUUUAUGCUUAACCAAGUUGUAGGCUUGCUGAAGCUCCGAUUCAACCUAAAUUAAAUUAUGGUUGAAUCUUUAUAAAGCCCCUACGUGU ......((((((((((...(((((.....)))))...))))...((((((((((((......))).)))))))))...))))))........... ( -21.60) >DroSec_CAF1 19959 95 - 1 AAAUAUUUUUAUGCUUAACCAAGUUGUAGGCUUGCUGAAGCUCCGAUUCAACCUAAAUUAAAUUAUGGUUUAAUCAUUAUAGAGCGCCUACGAGU .......................((((((((..((....))...((((.(((((((......))).)))).))))..........)))))))).. ( -19.60) >DroSim_CAF1 35705 95 - 1 AAAUAUUUUUAUGCUUAACCAAGUUGUAGGCUUGUUGAAGCUCCGAUUCAACCUAAAUUAAAUUAUGGUUGAAUCAUUAUAAAGCGCCUACGUGU .......(((((((((...(((((.....)))))...))))...((((((((((((......))).)))))))))...)))))((((....)))) ( -23.30) >DroEre_CAF1 20883 94 - 1 -AAUAUUUUUAUGCUUAACAAAGUCGUAGGCUUGCUGAAGCUCUGAUUCAACCUAAAUUAUAUUAUGGUUGAAUCUUGAUAAAGCUCCUACGUGU -...........((((....))))((((((...(((....(...((((((((((((......))).)))))))))..)....))).))))))... ( -24.70) >DroYak_CAF1 21157 95 - 1 AAAUAUCUUUAUGCUUAACAAAGUCGUAGGCCUGCUGAAGCUCCGAUUCAACCUAAAUUAAAUUAUGGUUGAAUCUUUAUAAAGCCCCUACGUGU ............((((....))))((((((...(((........((((((((((((......))).))))))))).......))).))))))... ( -22.66) >consensus AAAUAUUUUUAUGCUUAACCAAGUUGUAGGCUUGCUGAAGCUCCGAUUCAACCUAAAUUAAAUUAUGGUUGAAUCUUUAUAAAGCCCCUACGUGU ............((((....))))((((((...(((........((((((((((((......))).))))))))).......))).))))))... (-20.62 = -20.42 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:08 2006