Locus 8078

Sequence ID 3R_DroMel_CAF1
Location 21,692,519 – 21,692,633
Length 114
Max. P 0.847748
window13007

overview

Window 7

Location 21,692,519 – 21,692,633
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 92.98
Mean single sequence MFE -23.40
Consensus MFE -20.00
Energy contribution -20.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.50
Structure conservation index 0.85
SVM decision value 0.78
SVM RNA-class probability 0.847748
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21692519 114 - 27905053
UGUAGAAAAUGGCGGAGUCUUUAAAUUUAAAUGCUUAGGCAUAUACAUUUUAAGCCUGCGCAAUUUAAAAAUGCUGCCGUACGACUUUUAAAAUACACCCACAAAUUAUAAAUA
........(((((((.((.(((((((.....(((.(((((.((.......)).))))).)))))))))).)).))))))).................................. ( -22.70)
>DroSec_CAF1 15460 114 - 1
UAUAGAAAAUAGCGGAGUCUUUAAAUGUAAAUGCUUAGGAAUAUACAUUUUAAGCCUGAGCAAUUUAAAAAUGCUGCCGUACGAAUUUUAAAAACCACCCGCAAUUUACAAAUA
....(.((((.((((.((.((((((..((((((((((((..((.......))..))))))).)))))....(((....))).....)))))).))...)))).)))).)..... ( -21.70)
>DroSim_CAF1 30542 114 - 1
UAUAGAAAAUAGCGGAGUCUUUAAAUUUAAAUGCUUAGGCAUAUACAUUUUAAGCCUGAGCAAUUUAAAAAUGCUGCCGUACAAAUUUUAAAAUACACCCGCAAUUUACAAAUA
....(.((((.((((.((.(((((((((((((((((((((.((.......)).)))))))).)))))))..(((....))).....))))))....)))))).)))).)..... ( -25.80)
>consensus
UAUAGAAAAUAGCGGAGUCUUUAAAUUUAAAUGCUUAGGCAUAUACAUUUUAAGCCUGAGCAAUUUAAAAAUGCUGCCGUACGAAUUUUAAAAUACACCCGCAAUUUACAAAUA
..(((((....(((((((.(((((((.....(((((((((.((.......)).))))))))))))))))...))).)))).....)))))........................ (-20.00 = -20.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:06 2006