Locus 8074

Sequence ID 3R_DroMel_CAF1
Location 21,681,215 – 21,681,306
Length 91
Max. P 0.956090
window12999

overview

Window 9

Location 21,681,215 – 21,681,306
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 76.42
Mean single sequence MFE -27.93
Consensus MFE -16.52
Energy contribution -17.72
Covariance contribution 1.19
Combinations/Pair 1.06
Mean z-score -2.14
Structure conservation index 0.59
SVM decision value 1.46
SVM RNA-class probability 0.956090
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21681215 91 + 27905053
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAUAUGAGUGUUGCUUGCACAGUGGGCUACUUUCAAGGGUGU---------UGGAAG
.((((..((((((.(((((((((((...((....................))...))))))))))).))))((((....))))))---------..)))) ( -30.75)
>DroSec_CAF1 4250 91 + 1
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAUAUGAGUGUUGCUUGCACAGUGGGCUACUUUCAAGGGUAU---------UAAAAG
((((((((.((((.(((((((((((...((....................))...))))))))))).))))....))))))))..---------...... ( -28.15)
>DroSim_CAF1 4739 91 + 1
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAUAUGAGUGUUGCUUGCACAGUGGGCUAGUUUCAAGGGUGU---------UAAAAG
(((((((((((((.(((((((((((...((....................))...))))))))))).)))).))..)))))))..---------...... ( -28.85)
>DroEre_CAF1 4854 100 + 1
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAGAUGAGUGCUGCUUGCACAGUGGGCACAUUCGAGGAGUGUUCAAGGCGUUAAAGG
.((((((((.(((.(((((((((((..((((.......(.....)......)))))))))))))))((((((.((....))))))))..))))))))))) ( -35.12)
>DroYak_CAF1 4821 100 + 1
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAUAUGAGUGCUGCUUGCACAGUGGGCACAUUUGCAGAGUGUUCAAAGCGGUAACAG
.......((.(((.(((((((((((..((((......((.....)).....))))))))))))))).)))((((((...)))))).....))........ ( -28.20)
>DroPer_CAF1 69643 71 + 1
AUUUCUGCCUGCCAAUU--UCGGGCUGAGUAAGAUGAAU------------------CUGCACAGUGGACAAGGGUGGACUUUGU---------UUAAAG
...((.(((((......--.))))).))((.(((....)------------------))..))..(((((((((.....))))))---------)))... ( -16.50)
>consensus
ACUUUUGGCAGCCAAUUGUGCGGGCUGAGCAAGAUGAAUGAGGAAUAUGAGUGUUGCUUGCACAGUGGGCAAAUUUCAAGGGUGU_________UAAAAG
..........(((.(((((((((((...((....................))...))))))))))).))).............................. (-16.52 = -17.72 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:59 2006