Locus 8072

Sequence ID 3R_DroMel_CAF1
Location 21,674,949 – 21,675,047
Length 98
Max. P 0.711509
window12994

overview

Window 4

Location 21,674,949 – 21,675,047
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 95.86
Mean single sequence MFE -19.93
Consensus MFE -17.67
Energy contribution -17.83
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.38
SVM RNA-class probability 0.711509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 21674949 98 + 27905053
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCAAAAACGUUCGAAAAACCAGCAAAAGCAAUUAAAAGCAGCUGCUGCU-CGGCC
.............((((((((........)))........((((((......(((.....)))..((....))........))))))))))).-..... ( -19.10)
>DroSec_CAF1 154942 98 + 1
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCAAAAACGUUCGAAAAACCAGCAAAAGCAAUUAAAAGCAGCUGCUGCC-CGGCC
.............((((((((........)))........((((((......(((.....)))..((....))........))))))))))).-..... ( -18.70)
>DroSim_CAF1 160213 98 + 1
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCAAAAACGUUCGAAAAACCAGCAAAAGCAAUUAAAAGCAGCUGCUGCC-CGGCC
.............((((((((........)))........((((((......(((.....)))..((....))........))))))))))).-..... ( -18.70)
>DroEre_CAF1 152001 98 + 1
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCACAAACGUUCGAAAAACCAGCAAAAGCAAUUAAAAGCAGCUGCUGCC-CGGCC
.............((((((((........)))........((((((......(((.....)))..((....))........))))))))))).-..... ( -18.70)
>DroYak_CAF1 153009 99 + 1
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCACAAACGUUUGAAAAACCAGCAAAUGCAAUUAAAAGCAGCUGCUGCCCCGGCC
.(((........))).((.....(((((((((((((....))))).))).....)))))....(((((..(((........)))..))))).....)). ( -22.50)
>DroAna_CAF1 136726 98 + 1
AGCGACAAUUUCCGCAGCGAUUAUUCAGUGUCAACUAAAAAGUUGCCAAACUGUUUGAAAAACCAGAAAAAGCAAUUAAAAGCAGCUGCUGCC-GGGCC
..........(((((((((.(((..((((..(((((....)))))....))))..))).............((........))...))))).)-))).. ( -21.90)
>consensus
AGCGACAAUUUCCGCAGCGAUUAUUCAAUGUCAACUAAAAAGUUGCAAAAACGUUCGAAAAACCAGCAAAAGCAAUUAAAAGCAGCUGCUGCC_CGGCC
.............((((((((........)))........((((((......(((.....)))..((....))........)))))))))))....... (-17.67 = -17.83 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:54 2006