| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 21,674,681 – 21,674,772 |
| Length | 91 |
| Max. P | 0.766644 |
| Location | 21,674,681 – 21,674,772 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 86.48 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -19.05 |
| Energy contribution | -19.05 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 21674681 91 + 27905053 GAGAGCACGAGGGGUCUCGUAUUUUACGUGGCCAAAGUUGUACGUUCCCAACCAACUGACAUGCAGAUUUGGCC---AAAAAAAAAAAAAACAA .((((.(((((....))))).))))...((((((((.(((((.(((...........))).))))).)))))))---)................ ( -22.90) >DroSec_CAF1 154687 82 + 1 GAGAGCACGAGGGGUCUCGUAUUUU-CGAGGCCAAAGUUGUACGUUCCCAACCAACUGACAUGCAGAUUUGGCC---AAAAA---AA-----AA (((((.(((((....))))).))))-)..(((((((.(((((.(((...........))).))))).)))))))---.....---..-----.. ( -25.70) >DroEre_CAF1 151745 83 + 1 GAGAGCACGAGAGGUCUCGUAUUUUACGUGGUCAAAGUUGUACGUUCCCGGCCAACUGACAUGCAGAUUUGGCC---AACAAAAAA-------- (.(((((((((....)))))....((((..........)))).)))).)(((((((((.....)))..))))))---.........-------- ( -21.70) >DroYak_CAF1 152724 89 + 1 GCGAGCACGAGAGGUCUCGUAUUUUACGUGGUCAAAGUUGUACGUUCCCGGCCAACUGACAUGCAGAUUUGGCCCAAAACAAAAAAA-----UA (((((..(....)..))))).......(.(((((((.(((((.((...(((....))))).))))).))))))))............-----.. ( -21.50) >consensus GAGAGCACGAGAGGUCUCGUAUUUUACGUGGCCAAAGUUGUACGUUCCCAACCAACUGACAUGCAGAUUUGGCC___AAAAAAAAAA_____AA .((((.(((((....))))).))))....(((((((.(((((.(((...........))).))))).))))))).................... (-19.05 = -19.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:53 2006